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R07AX Other respiratory system products

RX_R07AX

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Medicine purchases: ATC R07AX

1 out of 7 registries used, show all original rules.

10

4. Check minimum number of events

Min. number of events 3
10

5. Include endpoints

None

10

6. Filter based on genotype QC (FinnGen only)

10

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze
DF3

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 10 - 6
Unadjusted period prevalence (%) 0.00 - 0.00
Median age at first event (years) 24.82 - 19.00

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3023419) Bacteria identified in Sputum by Culture
10
0
+∞
13.67
29.4
0.0
—
—
—
0
0
(3000067) Parathyrin.intact [Mass/volume] in Serum or Plasma
10
5
+∞
10.19
5.2
9.2
ng/l
50.3
48.8
—
10
5
(3000494) Fungus identified in Specimen by Culture
10
6
+∞
9.77
19.5
1.2
—
—
—
0
0
(3020779) Urea [Moles/volume] in Serum or Plasma
10
7
+∞
9.38
9.5
12.0
mmol/l
5.2
5.1
—
10
7
(3018677) aPTT in Platelet poor plasma by Coagulation assay
10
8
+∞
9.03
7.3
2.5
s
29.3
29.8
—
10
8
(3005322) IgE [Units/volume] in Serum or Plasma
10
10
+∞
8.40
5.1
1.4
u/ml
94.4
196.2
—
10
10
(3033658) Prothrombin time (PT) actual/Normal
10
16
+∞
6.95
18.5
2.1
%
96.0
101.8
—
10
16
(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection
5
0
+∞
5.69
3.4
0.0
—
—
—
0
0
(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection
5
0
+∞
5.69
3.6
0.0
—
—
—
0
0
(3008536) Aspergillus sp Ab [Presence] in Serum
5
0
+∞
5.69
1.2
0.0
—
—
—
0
0
(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection
5
0
+∞
5.69
3.8
0.0
—
—
—
0
0
(3042631) Mycobacterium sp identified in Specimen
5
0
+∞
5.69
28.6
0.0
—
—
—
0
0
(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection
5
0
+∞
5.69
4.4
0.0
—
—
—
0
0
(42870588) Differential panel, method unspecified - Blood
10
33
+∞
4.39
41.0
5.1
—
—
—
0
0
(3000492) Spirometry study
5
7
12.66
2.91
2.0
1.0
—
—
—
0
0
(3006504) Eosinophils/100 leukocytes in Blood
10
45
+∞
2.90
49.7
4.9
%
3.3
3.0
—
10
40
(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma
10
46
+∞
2.90
49.6
8.3
u/l
157.2
93.0
—
10
46
(3013115) Eosinophils [#/volume] in Blood
10
48
+∞
2.84
49.3
5.6
e9/l
0.2
0.2
—
10
43
(3001604) Monocytes [#/volume] in Blood
10
48
+∞
2.84
48.9
5.4
e9/l
0.6
0.5
—
10
42
(3006315) Basophils [#/volume] in Blood
10
48
+∞
2.84
48.9
5.4
e9/l
0.0
0.0
—
10
42
(3019198) Lymphocytes [#/volume] in Blood
10
51
+∞
2.68
48.9
5.2
e9/l
1.9
2.2
—
10
46
(3018251) Fasting glucose [Moles/volume] in Serum or Plasma
10
54
+∞
2.32
9.9
3.1
mmol/l
5.8
5.3
—
10
48
(3013650) Neutrophils [#/volume] in Blood by Automated count
10
54
+∞
2.32
46.2
8.3
e9/l
4.4
3.8
—
10
47
(3004789) Transferrin [Mass/volume] in Serum or Plasma
5
13
6.51
1.99
3.8
3.2
g/l
2.8
2.6
—
5
13
(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma
10
58
+∞
1.90
6.6
3.2
mmol/l
1.3
1.3
—
10
53
(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma
10
58
+∞
1.90
6.9
3.1
mmol/l
1.7
2.9
—
10
53
(40760892) CBC W Ordered Manual Differential panel - Blood
5
20
3.94
1.34
30.6
4.9
—
—
—
0
0
(3020460) C reactive protein [Mass/volume] in Serum or Plasma
10
80
+∞
0.69
88.3
10.1
mg/l
23.3
20.6
—
10
57
(3009542) Hematocrit [Volume Fraction] of Blood
10
81
+∞
0.69
52.4
9.1
%
40.7
41.6
—
10
73
(40761511) CBC panel - Blood by Automated count
10
85
+∞
0.45
54.2
8.3
—
—
—
0
0
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
0
15
0.00
0.45
0.0
2.4
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
10
83
+∞
0.45
66.1
9.0
umol/l
66.3
69.5
—
10
83
(3044889) 12 lead EKG panel
5
35
1.85
0.31
16.0
2.0
—
—
—
0
0
(21494755) Public health laboratory ask at order entry panel
0
10
0.00
0.23
0.0
1.3
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
10
0.00
0.23
0.0
1.4
—
—
—
0
0
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
0
12
0.00
0.22
0.0
2.0
—
—
—
0
0
(3021387) Prolactin [Units/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
209.4
—
0
5
(3028707) Methadone [Presence] in Urine by Screen method
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(3050129) First trimester maternal screen panel - Serum or Plasma
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3008909) Norovirus RNA [Presence] in Stool by NAA with probe detection
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3000620) Complement C3 [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
1.2
—
0
5
(3017766) Complement C4 [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
0.2
—
0
5
(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma
0
6
0.00
0.00
0.0
2.3
—
—
—
0
0
(3008898) HLA-B27 [Presence]
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3021879) Hepatitis B virus core Ab [Presence] in Serum
0
9
0.00
0.00
0.0
2.0
—
—
—
0
0
(3004716) Salmonella sp identified in Stool by Organism specific culture
0
9
0.00
0.00
0.0
1.4
—
—
—
0
0
(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.0
—
34.5
—
0
6
(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3011288) Drugs identified in Urine by Screen method
0
9
0.00
0.00
0.0
1.8
—
—
—
0
0
(3003284) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum by Immunofluorescence
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3009445) Proteinase 3 Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: RX_R07AX – R07AX Other respiratory system products

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).