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Other specified types of T/NK-cell lymphoma, hilmo

CD2_OTHER_SPECIAL_TNK_LYMPHOMA

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 C86
  • Cause of death: ICD-10 C86

2 out of 7 registries used, show all original rules.

5

4. Check minimum number of events

None

5

5. Include endpoints

None

5

6. Filter based on genotype QC (FinnGen only)

5

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF12

Similar endpoints

List of similar endpoints to Other specified types of T/NK-cell lymphoma, hilmo based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Similar with more cases:

Venn diagram with a set fully inside an highlighted set Similar with less cases:

Case counts by codes

FinnGen case counts by registry codes:

Not enough data for upset plot.

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 5 - -
Unadjusted period prevalence (%) 0.00 - -
Median age at first event (years) 69.98 - -

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3023368) Bacteria identified in Blood by Culture
5
12
+∞
2.75
13.4
7.4
—
—
—
0
0
(3006315) Basophils [#/volume] in Blood
5
20
+∞
1.82
7.0
4.2
e9/l
0.0
0.0
—
5
20
(3001604) Monocytes [#/volume] in Blood
5
20
+∞
1.82
7.0
4.2
e9/l
0.7
0.7
—
5
20
(3019198) Lymphocytes [#/volume] in Blood
5
20
+∞
1.82
7.0
4.2
e9/l
0.7
1.8
—
5
20
(1761868) Lipid panel - Serum or Plasma
0
20
0.00
0.83
0.0
4.8
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
0
19
0.00
0.82
0.0
2.2
—
—
—
0
0
(3012516) Albumin [Mass/volume] in Urine
0
15
0.00
0.51
0.0
2.7
—
12.5
—
0
9
(3025839) Triglyceride [Moles/volume] in Serum or Plasma
0
17
0.00
0.51
0.0
1.5
—
1.3
—
0
12
(3020682) Albumin/Creatinine [Ratio] in Urine
0
17
0.00
0.51
0.0
3.2
—
1.2
—
0
11
(3029937) Albumin [Presence] in Urine by Test strip
0
14
0.00
0.50
0.0
5.1
—
0.0
—
0
5
(40761511) CBC panel - Blood by Automated count
5
39
+∞
0.24
25.0
19.5
—
—
—
0
0
(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)
5
40
+∞
0.24
29.6
18.3
ml/min/173m2
76.2
79.9
—
5
30
(3021960) Folate [Moles/volume] in Serum or Plasma
0
12
0.00
0.24
0.0
1.2
—
22.8
—
0
7
(3020460) C reactive protein [Mass/volume] in Serum or Plasma
5
41
+∞
0.24
54.0
18.9
mg/l
27.0
19.9
—
5
34
(3002256) Pathology report gross observation
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3027946) Carbon dioxide [Partial pressure] in Arterial blood
0
6
0.00
0.00
0.0
3.2
—
4.6
—
0
6
(3011397) Hemoglobin [Presence] in Urine by Test strip
0
8
0.00
0.00
0.0
5.5
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
5
42
+∞
0.00
50.2
21.0
umol/l
76.6
73.3
—
5
42
(3016502) Oxygen saturation in Arterial blood
0
6
0.00
0.00
0.0
3.2
—
95.9
—
0
6
(3022145) Colonoscopy Study observation
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3027801) Oxygen [Partial pressure] in Arterial blood
0
6
0.00
0.00
0.0
3.2
—
11.8
—
0
6

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: CD2_OTHER_SPECIAL_TNK_LYMPHOMA – Other specified types of T/NK-cell lymphoma, hilmo

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).