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This is a non-core endpoint: only basic statistics are computed.

See its core counterpart CD2_INSITU_RESPNOS_EXALLC for full statistics.

Carcinoma in situ of respiratory system, other/unspecified

DOID Endpoint Browser

CD2_INSITU_RESPNOS

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — D02.3&, D02.4&
  • Hospital discharge: ICD-9 — 231[8-9]
  • Cause of death: ICD-10 — D02.3&, D02.4&
  • Cause of death: ICD-9 — 231[8-9]

2 out of 7 registries used, show all original rules.

19

4. Check minimum number of events

None

19

5. Include endpoints

None

19

6. Filter based on genotype QC (FinnGen only)

19

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF2

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Full data table

Summary Statistics

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-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 19 6 13
Unadjusted period prevalence (%) 0.00 0.00 0.01
Median age at first event (years) 70.17 71.96 69.34

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

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OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3000494) Fungus identified in Specimen by Culture
5
11
5.73
2.08
1.4
1.2
—
—
—
0
0
(3013512) EKG study
7
35
2.57
1.15
4.7
4.3
—
—
—
0
0
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
6
37
1.90
0.63
5.0
3.5
—
—
—
0
0
(3015736) pH of Urine
6
41
1.67
0.41
5.2
3.1
—
—
—
0
0
(40768804) Tissue Pathology biopsy report
6
41
1.67
0.41
2.2
2.4
—
—
—
0
0
(3044889) 12 lead EKG panel
5
70
0.61
0.34
4.0
4.3
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
5
36
1.52
0.27
1.4
2.8
—
—
—
0
0
(3021601) Nitrite [Presence] in Urine by Test strip
6
49
1.33
0.23
6.2
4.9
—
0.0
—
0
11
(3035350) Ketones [Presence] in Urine by Test strip
6
50
1.29
0.22
5.2
3.7
—
0.0
—
0
11
(3019060) Gas panel - Arterial blood
0
11
0.00
0.22
0.0
2.4
—
—
—
0
0
(3014111) Lactate [Moles/volume] in Serum or Plasma
0
11
0.00
0.22
0.0
6.1
—
1.0
—
0
11
(3004588) Protein electrophoresis panel - Serum or Plasma
0
10
0.00
0.22
0.0
1.7
—
—
—
0
0
(46236952) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)
0
10
0.00
0.22
0.0
2.6
—
63.4
—
0
5
(3000991) Gas panel - Venous blood
0
12
0.00
0.22
0.0
6.1
—
—
—
0
0
(3014007) Fractional oxyhemoglobin in Arterial blood
0
12
0.00
0.22
0.0
6.5
—
94.6
—
0
12
(4010399)
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
0
13
0.00
0.21
0.0
1.7
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
0
13
0.00
0.21
0.0
1.8
—
—
—
0
0
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
0
14
0.00
0.21
0.0
5.7
—
0.7
—
0
14
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
0
14
0.00
0.21
0.0
5.7
—
1.0
—
0
14
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
0
14
0.00
0.21
0.0
1.4
—
—
—
0
0
(3037467) Urinalysis macro (dipstick) panel - Urine
8
69
1.27
0.20
3.8
5.0
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
9
102
0.78
0.20
23.6
20.3
umol/l
78.9
84.8
—
9
102
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
6
51
1.26
0.10
3.7
3.3
—
—
—
0
0
(3009261) Glucose [Presence] in Urine by Test strip
6
51
1.26
0.10
5.2
3.7
—
0.0
—
0
9
(3013826) Glucose [Moles/volume] in Serum or Plasma
6
72
0.76
0.09
3.8
4.3
mmol/l
7.7
6.4
—
6
66
(40761511) CBC panel - Blood by Automated count
9
99
0.83
0.09
16.0
15.5
—
—
—
0
0
(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma
8
81
0.98
0.00
13.8
6.2
u/l
80.6
77.3
—
8
75
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
0
7
0.00
0.00
0.0
2.0
—
—
—
0
0
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.7
—
—
—
0
0
(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
4.1
—
438.0
—
0
7
(3008909) Norovirus RNA [Presence] in Stool by NAA with probe detection
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3018405) Lactate [Moles/volume] in Arterial blood
0
8
0.00
0.00
0.0
2.8
—
1.4
—
0
8
(3020891) Body temperature
0
6
0.00
0.00
0.0
4.5
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
6
0.00
0.00
0.0
2.2
—
—
—
0
0
(3027456) Digoxin [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
3.0
—
0.7
—
0
5
(3014218) Bicarbonate [Moles/volume] standard in Arterial blood
0
6
0.00
0.00
0.0
10.0
—
23.8
—
0
6
(3019473) Protein [Mass/volume] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.4
—
828.4
—
0
5
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
0
9
0.00
0.00
0.0
1.6
—
—
—
0
0
(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3013742) Prealbumin [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
2.6
—
0.2
—
0
5
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
0
9
0.00
0.00
0.0
4.2
—
23.9
—
0
9
(3046279) Procalcitonin [Mass/volume] in Serum or Plasma
0
9
0.00
0.00
0.0
1.8
—
0.5
—
0
9
(3028026) IgM [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.6
—
1.5
—
0
5
(3013139) Helicobacter pylori Ag [Presence] in Stool
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3022621) pH of Urine by Test strip
0
6
0.00
0.00
0.0
3.2
—
—
—
0
0
(3049717) Cytology report of Urine Cyto stain
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0

Mortality – FinRegistry

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This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

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Index endpoint: CD2_INSITU_RESPNOS – Carcinoma in situ of respiratory system, other/unspecified

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).