This is a non-core endpoint: only basic statistics are computed.

Melanoma in situ of lip

CD2_INSITU_MELANOMA_LIP_EXALLC

No definition available.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data
1. Apply sex-specific rule None	-
2. Check conditions None
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D03.0& Cause of death: ICD-10 — D03.0& 2 out of 7 registries used, show all original rules.	-
4. Check minimum number of events None	-
5. Include endpoints None	-
6. Filter based on genotype QC (FinnGen only) None	-

Control definitions (FinnGen only)

Control exclude: C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2
Parent code in ICD-10: D03
Name in latin: Melanoma in situ labii (oris)

NAME	CD2_INSITU_MELANOMA_LIP_EXALLC
CONTROL_EXCLUDE	C3_CANCER\|C3_CANCER_WIDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D030
HD_ICD_9	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D030
COD_ICD_9	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Melanoma in situ of lip based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Melanoma in situ of lip

Case counts by codes

↥

FinnGen case counts by registry codes:

No upset plot: script not run.

No upset table: script not run.

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	16	10	6
Unadjusted period prevalence (%)	0.00	0.00	0.00
Median age at first event (years)	62.56	61.74	63.92

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

No data available

LabWAS

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(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

unit

cases

controls

-log₁₀(p)

N cases

N controls

(3007853) Bacteria identified in Skin by Aerobe culture

10.26

3.64

1.4

2.3

—

(3004119) Hemoglobin [Mass/volume] in Venous blood

11.32

2.96

3.4

1.3

g/l

109.2

141.8

—

(40768804) Tissue Pathology biopsy report

4.09

1.86

3.6

1.7

—

(40760892) CBC W Ordered Manual Differential panel - Blood

4.04

1.57

7.2

3.4

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

3.34

1.32

2.8

2.4

—

(3013512) EKG study

2.32

0.86

5.3

5.0

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

2.44

0.81

4.0

7.9

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

2.32

0.81

3.9

3.3

—

(42870588) Differential panel, method unspecified - Blood

2.11

0.80

11.9

6.7

—

(3005785) Creatine kinase.MB [Mass/volume] in Serum or Plasma

0.00

0.65

0.0

1.5

—

2.4

—

(40768797) Stomach Pathology biopsy report

0.00

0.65

0.0

1.2

—

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

0.00

0.43

0.0

2.7

—

(3041096) Erythrocytes [Presence] in Urine by Automated

1.56

0.27

6.0

2.9

—

(3015736) pH of Urine

1.33

0.22

3.6

2.9

—

(3022621) pH of Urine by Test strip

0.00

0.22

0.0

4.4

—

(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum

0.00

0.22

0.0

1.9

—

(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.22

0.0

1.0

—

(3019060) Gas panel - Arterial blood

0.00

0.21

0.0

2.7

—

(3021589) Normoblasts [#/volume] in Blood

1.28

0.11

28.7

8.1

e9/l

0.0

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

1.21

0.11

6.3

3.2

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

0.00

0.0

1.0

—

(4010399)

0.00

0.0

1.1

—

(3008152) Bicarbonate [Moles/volume] in Arterial blood

0.00

0.0

3.9

—

25.2

—

(36660697) Celiac disease serology panel - Serum

0.00

0.0

1.0

—

(3000492) Spirometry study

0.00

0.0

1.9

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

0.00

0.0

1.2

—

(3026989) Triiodothyronine (T3) Free [Moles/volume] in Serum or Plasma

0.00

0.0

1.8

—

4.9

—

(3018405) Lactate [Moles/volume] in Arterial blood

0.00

0.0

1.7

—

1.2

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.0

1.8

—

(3037467) Urinalysis macro (dipstick) panel - Urine

1.08

0.00

5.0

5.1

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

0.00

0.0

1.2

—

(3037121) Protein [Mass/volume] in Urine

0.00

0.0

1.2

—

(3045414) Leukocytes [Presence] in Urine

0.00

0.0

3.8

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.0

1.8

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

0.00

0.0

1.2

—

(3035797) Protein.monoclonal band 2 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.0

1.0

—

0.0

—

(3020891) Body temperature

0.00

0.0

2.0

—

(4034850)

0.00

0.0

16.6

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

1.03

0.00

3.0

2.2

—

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.0

1.0

—

0.0

—

(3029338) Protein.monoclonal band 3 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.0

1.0

—

0.0

—

(3044889) 12 lead EKG panel

0.98

0.00

4.2

4.7

—

(42529406) Shigella sp [Presence] in Stool by Culture

0.00

0.0

1.2

—

(3026008) Bacteria identified in Urine by Culture

1.09

0.00

3.2

4.1

—

(3019832) Treponema pallidum Ab [Presence] in Serum

0.00

0.0

1.4

—

(3025941) Bacteria identified in Stool by Culture

0.00

0.0

1.0

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: CD2_INSITU_MELANOMA_LIP_EXALLC – Melanoma in situ of lip

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Melanoma in situ of lip

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

LabWAS

Mortality – FinRegistry

Relationships between endpoints