muscle cancer: A musculoskeletal system cancer that is located_in muscle.
Benign neoplasm: Female genital organ, unspecified
DOID EFO Endpoint Browser PheWeb
CD2_BENIGN_FEMALE_GEN_NOS
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleonly females |
293373 |
2. Check conditionsNone |
293373 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
108 |
4. Check minimum number of eventsNone |
108 |
5. Include endpointsNone |
108 |
6. Filter based on genotype QC (FinnGen only) |
108 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D28
- Name in latin
- Neoplasma benignum organi genitalis feminini non specificati
Similar endpoints
↥List of similar endpoints to
Benign neoplasm: Female genital organ, unspecified
based on the number of shared cases.
Similar with more cases:
- Benign neoplasm: Female genital organ, unspecified
- Benign neoplasm of other and unspecified female genital organs
- Benign neoplasm of other and unspecified female genital organs
- Benign neoplasms
- Benign neoplasms
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 995 | 995 | - |
| Only index persons | 837 | 837 | - |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.03 | 0.03 | - |
| Only index persons | 0.03 | 0.03 | - |
| Median age at first event (years) | |||
| Whole population | - | 44.49 | - |
| Only index persons | - | 42.31 | - |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 108 | 108 | - |
| Unadjusted period prevalence (%) | 0.04 | 0.04 | - |
| Median age at first event (years) | 39.04 | 39.04 | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 95
- Matched controls
- 950
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
D28.9
ICD-10 Finland
Benign neoplasm: Female genital organ, unspecified
+∞
65.3
55
*
22199
ICD-8 Finland
Benign neoplasm of other female genital organs, Unspecified site
+∞
30.9
28
*
2218X
ICD-9 Finland
Benign neoplasm of other female genital organs, Other specified sites of female genital organs
+∞
9.5
9
*
LFB10
NOMESCO Finland
Excision of lesion of vulva or perineum
20.5
7.8
11
6
Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_FEMALE_GEN_NOS and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_FEMALE_GEN_NOS.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_FEMALE_GEN_NOS – Benign neoplasm: Female genital organ, unspecified
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
Loading data