This is a non-core endpoint: only basic statistics are computed.
See its core counterpart C3_COLORECTAL_SQUAM_EXALLC for full statistics.
Colorectal squamous cell carcinoma
C3_COLORECTAL_SQUAM
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
1 out of 7 registries used, show all original rules. |
38 |
4. Check minimum number of eventsNone |
38 |
5. Include endpointsNone |
38 |
6. Filter based on genotype QC (FinnGen only) |
38 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- C
- First used in FinnGen datafreeze
- DF9
Similar endpoints
↥List of similar endpoints to
Colorectal squamous cell carcinoma
based on the number of shared cases.
Similar with more cases:
- Colorectal squamous cell carcinoma, excluding all cancers (controls excluding all cancers)
- Colorectal cancer
- Colorectal cancer, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm of digestive organs
- Malignant neoplasm of digestive organs, excluding all cancers (controls excluding all cancers)
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 38 | 31 | 7 |
| Unadjusted period prevalence (%) | 0.01 | 0.01 | 0.00 |
| Median age at first event (years) | 62.06 | 59.94 | 71.42 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma
28
43
21.94
20.83
3.4
5.5
ug/l
2.1
12.0
1.17
23
37
(3022145) Colonoscopy Study observation
25
38
17.31
18.36
2.8
1.1
—
—
—
0
0
(4035726)
18
28
11.31
12.35
1.4
1.2
—
—
—
0
0
(3024561) Albumin [Mass/volume] in Serum or Plasma
29
140
5.50
5.50
9.0
5.4
g/l
35.3
35.1
0.09
29
132
(3012095) Magnesium [Moles/volume] in Serum or Plasma
17
54
4.89
5.27
2.3
2.8
mmol/l
0.8
0.8
0.81
17
49
(3023368) Bacteria identified in Blood by Culture
20
77
4.37
4.78
6.3
4.8
—
—
—
0
0
(40768804) Tissue Pathology biopsy report
28
144
4.59
4.39
3.5
1.8
—
—
—
0
0
(3015377) Calcium [Moles/volume] in Serum or Plasma
22
113
3.25
3.10
8.4
4.6
mmol/l
2.3
2.3
0.30
22
97
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
9
23
4.79
3.00
1.2
1.4
—
—
—
0
0
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
7
14
5.86
2.88
6.1
5.5
mmol/l
24.7
25.8
—
7
14
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
16
71
3.17
2.83
2.6
2.0
—
—
—
0
0
(40758558) Short blood count panel - Blood
18
86
3.08
2.81
10.1
9.5
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
21
112
2.96
2.67
3.6
3.0
—
—
—
0
0
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
13
55
3.07
2.45
2.5
2.8
e6/l
2.7
4.1
—
7
30
(3033658) Prothrombin time (PT) actual/Normal
17
84
2.85
2.44
3.2
3.9
%
101.1
93.0
0.60
17
84
(3002256) Pathology report gross observation
11
42
3.28
2.44
2.0
1.2
—
—
—
0
0
(3006140) Bilirubin.total [Moles/volume] in Serum or Plasma
29
202
2.83
2.21
11.4
7.4
umol/l
8.0
9.8
2.02
29
189
(3025941) Bacteria identified in Stool by Culture
6
15
4.53
2.13
1.0
1.2
—
—
—
0
0
(3037467) Urinalysis macro (dipstick) panel - Urine
30
214
2.90
2.05
5.6
4.3
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
23
142
2.57
2.04
5.8
4.2
—
—
—
0
0
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
5
11
5.05
2.00
6.0
9.9
%
0.9
1.4
—
5
11
(3014007) Fractional oxyhemoglobin in Arterial blood
5
11
5.05
2.00
6.0
10.3
%
97.4
94.7
—
5
11
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
5
11
5.05
2.00
6.0
9.9
%
0.4
0.8
—
5
11
(3044640) Blood type and Crossmatch panel - Blood
17
94
2.46
1.87
3.1
2.2
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
17
95
2.43
1.82
3.7
3.0
—
—
—
0
0
(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection
5
14
3.94
1.67
1.0
1.0
—
—
—
0
0
(3032080) INR in Blood by Coagulation assay
20
124
2.29
1.66
5.7
6.8
inr
1.0
1.2
—
5
39
(42870588) Differential panel, method unspecified - Blood
18
108
2.27
1.60
5.0
5.4
—
—
—
0
0
(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma
12
60
2.46
1.59
5.0
3.9
mmol/l
2.5
2.5
0.18
12
49
(3000492) Spirometry study
6
22
3.04
1.50
1.0
1.7
—
—
—
0
0
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
5
16
3.43
1.49
9.4
9.2
—
—
—
0
0
(3001604) Monocytes [#/volume] in Blood
23
157
2.18
1.46
3.4
5.7
e9/l
0.5
0.6
0.04
17
144
(3006315) Basophils [#/volume] in Blood
23
157
2.18
1.46
3.5
5.8
e9/l
0.0
0.0
1.44
17
144
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
12
63
2.32
1.42
2.1
2.6
e6/l
0.2
1.0
—
6
38
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
13
71
2.26
1.41
1.9
1.3
—
—
—
0
0
(3001019) Free T4 and TSH panel - Serum or Plasma
5
17
3.22
1.40
1.8
1.6
—
—
—
0
0
(3019198) Lymphocytes [#/volume] in Blood
23
160
2.11
1.35
3.8
5.9
e9/l
1.3
1.8
2.37
18
148
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
5
18
3.04
1.33
2.4
1.5
—
—
—
0
0
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
19
124
2.06
1.31
2.2
1.9
pmol/l
87.1
99.5
—
10
51
(3002173) Hemoglobin [Mass/volume] in Arterial blood
6
25
2.65
1.30
8.3
8.0
g/l
112.7
119.0
—
6
25
(3000991) Gas panel - Venous blood
5
19
2.87
1.25
6.4
8.1
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
5
19
2.87
1.25
1.6
2.2
—
—
—
0
0
(3013115) Eosinophils [#/volume] in Blood
23
164
2.02
1.22
4.3
5.8
e9/l
0.2
0.2
0.37
18
150
(3021589) Normoblasts [#/volume] in Blood
19
127
1.99
1.21
17.2
10.7
e9/l
0.0
0.0
0.00
13
102
(3007853) Bacteria identified in Skin by Aerobe culture
7
30
2.63
1.20
1.3
1.5
—
—
—
0
0
(3048689) Calprotectin [Mass/mass] in Stool
7
33
2.37
1.12
1.3
1.7
ug/g
92.9
96.8
—
7
26
(46235355) HIV 1 and 2 tests - Meaningful Use set
7
34
2.29
1.09
1.1
1.6
—
—
—
0
0
(3016502) Oxygen saturation in Arterial blood
6
27
2.44
0.98
8.3
7.6
%
98.3
95.6
—
6
27
(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma
16
107
1.86
0.97
4.7
2.6
u/l
57.4
54.9
0.12
16
98
(21494755) Public health laboratory ask at order entry panel
6
29
2.26
0.94
1.0
1.3
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
27
0.00
0.81
0.0
1.1
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
9
58
1.72
0.77
2.8
1.6
—
—
—
0
0
(3003694) ABO and Rh group [Type] in Blood
11
71
1.77
0.72
1.3
1.3
—
—
—
0
0
(3004410) Hemoglobin A1c/Hemoglobin.total in Blood
27
308
0.57
0.68
3.7
5.8
mmol/mol
37.0
39.9
1.81
22
286
(40760892) CBC W Ordered Manual Differential panel - Blood
10
64
1.76
0.66
4.6
4.9
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
7
45
1.68
0.53
1.7
1.5
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
7
45
1.68
0.53
1.7
1.5
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
5
31
1.70
0.45
1.4
2.1
—
—
—
0
0
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
0
16
0.00
0.42
0.0
1.2
—
—
—
0
0
(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma
9
68
1.42
0.42
1.4
1.7
mg/l
3.6
0.8
—
9
58
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
0
18
0.00
0.41
0.0
1.0
—
—
—
0
0
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
0
18
0.00
0.41
0.0
1.2
—
—
—
0
0
(3009542) Hematocrit [Volume Fraction] of Blood
33
301
1.73
0.40
22.7
15.3
%
37.9
39.6
1.29
26
219
(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma
13
101
1.44
0.38
1.4
2.1
u/l
95.8
112.7
0.21
13
96
(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma
15
121
1.40
0.36
2.5
3.5
u/l
24.3
29.8
0.88
15
113
(3002385) Erythrocyte distribution width [Ratio]
29
266
1.38
0.34
33.6
18.2
%
13.8
13.7
0.17
29
261
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
21
181
1.36
0.33
3.1
2.7
—
—
—
0
0
(3018251) Fasting glucose [Moles/volume] in Serum or Plasma
31
324
0.77
0.31
3.9
4.6
mmol/l
5.7
5.8
0.47
26
299
(3041096) Erythrocytes [Presence] in Urine by Automated
11
86
1.39
0.30
3.9
3.6
—
—
—
0
0
(3009201) Thyrotropin [Units/volume] in Serum or Plasma
29
305
0.79
0.28
4.6
4.8
mu/l
2.0
1.8
0.30
24
276
(3015171) Extractable nuclear Ab [Units/volume] in Serum
0
11
0.00
0.22
0.0
1.3
—
—
—
0
0
(40768443) Skin Pathology biopsy report
0
11
0.00
0.22
0.0
1.4
—
—
—
0
0
(3003327) Ova and parasites identified in Stool by Light microscopy
0
11
0.00
0.22
0.0
1.7
—
—
—
0
0
(3004490) Bicarbonate [Moles/volume] standard in Capillary blood
0
10
0.00
0.22
0.0
4.4
—
24.6
—
0
10
(40758310) Human epididymis protein 4 [Moles/volume] in Serum or Plasma
0
10
0.00
0.22
0.0
1.8
—
93.3
—
0
10
(3007778) Kappa light chains/Lambda light chains [Mass Ratio] in Serum
0
10
0.00
0.22
0.0
2.6
—
—
—
0
0
(3020891) Body temperature
0
10
0.00
0.22
0.0
4.1
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
0
10
0.00
0.22
0.0
1.3
—
—
—
0
0
(3022313) Gas panel - Capillary blood
0
10
0.00
0.22
0.0
4.4
—
—
—
0
0
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
(3013512) EKG study
11
91
1.29
0.20
3.6
3.5
—
—
—
0
0
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
7
59
1.23
0.19
1.6
1.3
—
—
—
0
0
(3013826) Glucose [Moles/volume] in Serum or Plasma
20
181
1.22
0.17
6.9
4.5
mmol/l
6.6
6.5
0.04
20
171
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
13
115
1.20
0.13
3.5
4.0
—
—
—
0
0
(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma
12
134
0.85
0.11
2.6
2.3
nmol/l
74.7
76.0
0.05
12
119
(3011397) Hemoglobin [Presence] in Urine by Test strip
6
69
0.85
0.08
2.7
3.3
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
10
109
0.89
0.04
1.9
3.0
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
10
106
0.92
0.01
4.4
2.7
—
—
—
0
0
(3015736) pH of Urine
11
113
0.96
0.00
2.5
3.4
—
—
—
0
0
(3044889) 12 lead EKG panel
24
237
1.03
0.00
4.0
3.9
—
—
—
0
0
(3014702) Chromogranin A [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.2
—
5.5
—
0
6
(3030408) 3-Methoxytyramine [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3001788) Aldosterone [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.0
—
283.2
—
0
6
(3013327) Hepatitis A virus IgM Ab [Presence] in Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(1001926) Buprenorphine [Presence] in Urine by Screen method
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(3007164) IgA [Mass/volume] in Serum or Plasma
6
65
0.91
0.00
1.3
1.4
g/l
2.0
2.3
—
6
34
(36304997) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ and CD8+ T-cells [Units/volume] in Blood
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(21494890) Protein electrophoresis panel - 24 hour Urine
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3048929) Epstein Barr virus Ab [Presence] in Serum
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3009340) Metanephrine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3018405) Lactate [Moles/volume] in Arterial blood
0
7
0.00
0.00
0.0
4.7
—
1.8
—
0
7
(3026493) Urate [Moles/volume] in Serum or Plasma
8
85
0.93
0.00
1.4
2.4
umol/l
30991.3
6172.9
—
8
70
(3005702) Mycobacterium sp identified in Specimen by Organism specific culture
0
9
0.00
0.00
0.0
1.2
—
—
—
0
0
(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3010130) Cytomegalovirus IgG Ab [Units/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3026389) Candida sp identified in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3012441) Differential panel - Pleural fluid
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(1002224) Polysomnography panel
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3051651) Icteric interference index of Serum or Plasma
0
5
0.00
0.00
0.0
2.2
—
—
—
0
0
(3007844) Epstein Barr virus capsid IgM Ab [Units/volume] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
0
9
0.00
0.00
0.0
1.2
—
—
—
0
0
(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
(3037522) Nuclear Ab [Titer] in Serum
5
51
0.98
0.00
1.2
1.4
—
805.0
—
0
16
(40760888) Immunoglobulin light chains.free panel - Serum
0
7
0.00
0.00
0.0
3.1
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: C3_COLORECTAL_SQUAM – Colorectal squamous cell carcinoma
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).