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Vaginal lichen planus

Endpoint Browser PheWeb

VAGINAL_LICHEN_PLANUS

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

3 out of 7 registries used, show all original rules.

135

4. Check minimum number of events

None

135

5. Include endpoints

None

135

6. Filter based on genotype QC (FinnGen only)

135

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze
DF12

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 135 135 -
Unadjusted period prevalence (%) 0.05 0.05 -
Median age at first event (years) 65.35 65.35 -

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
107
Matched controls
1070
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
N77.8*L43.9
ICD-10 Finland
Vulvovaginal ulceration and inflammation caused by lichen ruber planus
+∞
154.3
107
*
LFB00
NOMESCO Finland
Biopsy of vulva or perineum
85.5
54.6
59
15
ULA02
NOMESCO Finland
Kolposcopy
32.0
50.9
77
79
D07AD01
ATC
clobetasol; topical
30.5
50.3
87
133
L43.9
ICD-10 Finland
Lichen planus, unspecified
78.7
50.2
55
14
LEB00
NOMESCO Finland
Biopsy of vagina
37.9
28.6
36
14
L43.8
ICD-10 Finland
Other lichen planus
30.2
28.3
38
19
XLD00
NOMESCO Finland
Sytologyspecimen from mouth of uterus
11.6
27.3
61
109
K13.74
ICD-10 Finland
Lichen rubs planus in the mouth
48.9
24.5
29
8
N77.8
ICD-10 Finland
Vulvovaginal ulceration and inflammation in other diseases classified elsewhere
+∞
21.6
20
*
L90.0
ICD-10 Finland
Lichen sclerosus et atrophicus
15.1
15.1
25
21
LC2BE
NOMESCO Finland
Transvaginal ultrasound examination of uterus, parametria and lower abdomen
5.2
14.7
68
267
D07AC01
ATC
betamethasone; topical
4.9
13.6
68
279
SBA00
NOMESCO Finland
Microbiological examinations
46.4
13.6
16
*
J02AC01
ATC
fluconazole; systemic
4.9
12.4
81
418
N89.5
ICD-10 Finland
Stricture and atresia of vagina
121.4
10.6
11
*
G01AA10
ATC
clindamycin; vaginal
4.2
10.3
48
172
A07EA02
ATC
hydrocortisone; rectal
19.1
10.2
15
9
N76.3
ICD-10 Finland
Subacute and chronic vulvitis
44.5
10.2
12
*
SBB00
NOMESCO Finland
Fotograf of mouth and teeth
15.4
10.0
16
12
L43
ICD-10 Finland
Lichen planus
30.3
8.7
11
*
L43.3
ICD-10 Finland
Subacute (active) lichen planus
+∞
8.4
8
*
L43.0
ICD-10 Finland
Hypertrophic lichen planus
36.4
8.2
10
*
Z70.8
ICD-10 Finland
Other sex counselling
+∞
7.4
7
*
TLE00
NOMESCO Finland
Dilatation of vagina
+∞
7.4
7
*
WX105
NOMESCO Finland
Surface analgesia on skin or mucosa
5.1
7.3
23
54
EKA10
NOMESCO Finland
Biopsy of cheek
11.2
7.3
13
13
LCA06
NOMESCO Finland
Biopsy of endometrium
3.4
6.4
35
135
ECA20
NOMESCO Finland
Biopsy of gingiva
28.5
6.3
8
*
N94.1
ICD-10 Finland
Dyspareunia
28.5
6.3
8
*
N95.0
ICD-10 Finland
Postmenopausal bleeding
3.9
6.2
26
81

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3026389) Candida sp identified in Specimen by Organism specific culture
22
17
15.27
23.41
3.0
1.2
—
—
—
0
0
(3025130) Human papilloma virus identified in Specimen
23
23
11.85
20.86
1.8
2.0
—
—
—
0
0
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
68
279
3.90
13.76
1.8
1.4
—
—
—
0
0
(40768804) Tissue Pathology biopsy report
96
538
3.72
11.31
3.0
2.1
—
—
—
0
0
(40768443) Skin Pathology biopsy report
23
56
4.75
9.14
1.2
1.2
—
—
—
0
0
(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection
22
60
4.19
7.55
1.5
1.5
—
—
—
0
0
(3044889) 12 lead EKG panel
111
852
2.70
4.85
3.9
3.7
—
—
—
0
0
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
11
28
4.19
4.06
1.4
1.4
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
46
268
2.09
3.75
5.9
3.5
—
—
—
0
0
(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma
43
245
2.11
3.71
1.2
1.3
iu/ml
22.0
33.3
0.52
12
91
(3048689) Calprotectin [Mass/mass] in Stool
33
169
2.26
3.70
1.5
2.0
ug/g
76.9
126.3
0.74
27
128
(3026008) Bacteria identified in Urine by Culture
63
414
1.98
3.67
4.3
2.8
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
22
95
2.57
3.56
1.2
1.2
—
—
—
0
0
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
33
175
2.17
3.39
2.7
3.0
e6/l
2.4
4.4
0.96
15
87
(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence
7
11
6.64
3.22
1.0
1.4
—
—
—
0
0
(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma
117
990
2.36
3.00
4.8
4.5
pmol/l
14.3
14.8
1.79
112
903
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
34
191
2.04
2.99
2.5
2.6
e6/l
0.5
1.0
1.50
17
100
(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum
47
297
1.89
2.95
1.3
1.2
u/ml
0.8
1.3
0.40
11
86
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
14
53
2.83
2.90
1.1
1.0
—
—
—
0
0
(42869547) Procollagen type III.N-terminal propeptide [Mass/volume] in Serum
5
6
8.59
2.77
2.8
1.0
ug/l
9.1
10.5
—
5
6
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
68
491
1.78
2.73
2.0
2.1
pmol/l
91.5
103.6
1.40
34
219
(36304419) Bacteria [Presence] in Urine
49
321
1.83
2.72
2.6
2.8
—
—
—
0
0
(3037467) Urinalysis macro (dipstick) panel - Urine
103
845
1.92
2.66
6.6
4.4
—
—
—
0
0
(3007853) Bacteria identified in Skin by Aerobe culture
23
117
2.16
2.60
1.5
1.5
—
—
—
0
0
(3035350) Ketones [Presence] in Urine by Test strip
78
594
1.74
2.53
5.9
3.7
estimate
0.0
0.0
—
10
115
(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma
129
1179
3.12
2.50
4.9
4.7
mmol/l
1.6
1.6
0.36
121
1081
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
60
426
1.74
2.49
3.3
2.9
—
—
—
0
0
(42870588) Differential panel, method unspecified - Blood
56
391
1.74
2.46
6.8
5.3
—
—
—
0
0
(3000494) Fungus identified in Specimen by Culture
28
157
1.99
2.46
2.1
1.3
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
87
689
1.74
2.40
2.6
2.9
—
—
—
0
0
(3030467) Casts [#/volume] in Urine by Automated count
48
325
1.74
2.33
2.9
2.9
e6/l
0.1
0.5
2.11
32
235
(3021601) Nitrite [Presence] in Urine by Test strip
78
603
1.70
2.32
8.1
5.0
estimate
0.0
0.0
—
9
116
(3024731) MCV [Entitic volume]
135
1290
+∞
2.31
21.7
20.3
fl
90.9
91.2
0.33
135
1271
(3035941) MCH [Entitic mass]
135
1290
+∞
2.31
21.7
20.2
pg
30.1
30.2
0.46
135
1271
(3000963) Hemoglobin [Mass/volume] in Blood
135
1290
+∞
2.31
21.9
20.4
g/l
133.4
132.2
0.63
135
1271
(3018095) Leukocytes [#/volume] in Urine
59
425
1.69
2.28
4.3
3.7
e6/l
125.9
76.8
0.32
39
293
(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture
5
9
5.72
2.23
1.2
1.1
—
—
—
0
0
(3013650) Neutrophils [#/volume] in Blood by Automated count
87
697
1.70
2.23
8.0
9.4
e9/l
3.9
3.8
0.31
78
618
(3019900) Cholesterol [Moles/volume] in Serum or Plasma
129
1190
2.89
2.20
5.3
4.7
mmol/l
4.8
4.9
0.28
122
1099
(3009261) Glucose [Presence] in Urine by Test strip
77
607
1.63
2.02
6.0
3.7
estimate
0.0
0.0
—
10
111
(3002582) Erythrocytes [#/volume] in Urine
50
354
1.66
2.02
3.1
3.1
e6/l
26.4
40.5
0.35
35
264
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
7
22
3.30
1.90
1.6
1.4
—
—
—
0
0
(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain
6
17
3.64
1.86
1.5
1.3
—
—
—
0
0
(3033658) Prothrombin time (PT) actual/Normal
43
301
1.63
1.79
3.4
3.3
%
104.3
95.2
1.37
43
291
(3013115) Eosinophils [#/volume] in Blood
77
622
1.55
1.72
6.5
5.5
e9/l
0.2
0.2
0.28
69
555
(3020460) C reactive protein [Mass/volume] in Serum or Plasma
128
1191
2.44
1.68
14.0
13.5
mg/l
21.6
19.8
0.25
102
909
(3019198) Lymphocytes [#/volume] in Blood
75
605
1.54
1.67
6.3
5.3
e9/l
1.9
2.1
0.38
67
548
(3001604) Monocytes [#/volume] in Blood
74
596
1.53
1.65
6.4
5.2
e9/l
0.5
0.5
0.11
65
525
(3032773) Endomysium IgG Ab [Titer] in Serum
5
14
3.67
1.63
1.0
1.0
—
—
—
0
0
(3006315) Basophils [#/volume] in Blood
74
599
1.52
1.59
6.4
5.3
e9/l
0.0
0.0
0.56
65
527
(3004410) Hemoglobin A1c/Hemoglobin.total in Blood
123
1126
2.04
1.57
6.4
5.9
mmol/mol
39.1
39.5
0.32
117
1045
(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma
54
410
1.53
1.56
1.9
2.2
u/l
50.6
58.0
1.51
49
373
(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma
38
268
1.58
1.51
2.1
2.2
mg/l
2.4
3.5
2.10
28
232
(3004716) Salmonella sp identified in Stool by Organism specific culture
14
73
2.02
1.50
1.6
1.4
—
—
—
0
0
(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum
36
252
1.58
1.48
1.3
1.3
u/ml
26.2
12.1
0.24
12
97
(3027315) Oxygen [Partial pressure] in Blood
6
22
2.80
1.45
1.8
2.5
kpa
8.3
8.7
—
6
22
(3013290) Carbon dioxide [Partial pressure] in Blood
6
22
2.80
1.45
1.8
2.5
kpa
5.3
5.0
—
6
22
(3015736) pH of Urine
60
474
1.48
1.41
6.3
3.4
—
—
—
0
0
(40758558) Short blood count panel - Blood
43
318
1.52
1.38
6.7
7.6
—
—
—
0
0
(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma
69
562
1.47
1.38
2.3
2.4
nmol/l
77.4
79.7
0.35
63
496
(3019309) Folate [Moles/volume] in Red Blood Cells
32
222
1.58
1.36
1.6
1.8
nmol/l
1323.6
1217.2
0.25
26
159
(40761535) Cells panel - Urine sediment
17
100
1.80
1.31
3.6
3.0
—
—
—
0
0
(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma
89
769
1.46
1.26
2.8
3.0
u/l
33.7
44.0
2.12
83
711
(3016650) Hepatitis A virus Ab [Presence] in Serum
5
19
2.69
1.22
1.0
1.0
—
—
—
0
0
(3025839) Triglyceride [Moles/volume] in Serum or Plasma
46
354
1.45
1.20
1.8
1.7
mmol/l
1.2
1.3
0.51
38
294
(3007164) IgA [Mass/volume] in Serum or Plasma
36
264
1.50
1.19
1.3
1.4
g/l
2.3
2.3
0.09
19
157
(40760892) CBC W Ordered Manual Differential panel - Blood
37
273
1.49
1.19
4.1
4.3
—
—
—
0
0
(3006140) Bilirubin.total [Moles/volume] in Serum or Plasma
80
682
1.42
1.19
4.3
5.9
umol/l
10.6
10.0
0.49
75
643
(40768797) Stomach Pathology biopsy report
27
186
1.56
1.18
1.3
1.2
—
—
—
0
0
(4010399)
15
88
1.79
1.17
1.4
1.4
—
—
—
0
0
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
11
58
1.98
1.16
2.3
4.9
mmol/l
25.6
25.8
0.07
11
58
(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma
31
222
1.51
1.14
3.0
3.5
ng/l
13.4
112.4
1.02
19
168
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
18
113
1.68
1.12
1.9
1.6
—
—
—
0
0
(3042936) Bacteria identified in Isolate by Culture
25
172
1.56
1.10
1.5
1.8
—
—
—
0
0
(3018010) Neutrophils/100 leukocytes in Blood
68
569
1.39
1.10
7.0
5.4
%
55.9
56.0
0.02
63
529
(3013512) EKG study
28
380
0.67
1.08
2.9
3.7
—
—
—
0
0
(3008898) HLA-B27 [Presence]
9
47
1.98
1.04
1.1
1.1
—
—
—
0
0
(3018251) Fasting glucose [Moles/volume] in Serum or Plasma
125
1178
1.83
1.02
5.2
4.8
mmol/l
5.8
5.9
0.40
118
1082
(3052851) Hemolysis interference index of Serum or Plasma
7
36
1.99
0.98
1.6
3.3
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
9
51
1.82
0.96
1.3
1.3
—
—
—
0
0
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
17
110
1.62
0.96
3.0
3.4
—
—
—
0
0
(3002030) Lymphocytes/100 leukocytes in Blood
68
578
1.36
0.96
6.8
5.6
%
29.5
29.2
0.08
63
530
(36305247) Microscopic observation [Identifier] in Isolate by Gram stain
6
27
2.28
0.94
1.2
1.4
—
—
—
0
0
(3006418) Campylobacter sp identified in Tissue by Organism specific culture
9
52
1.78
0.94
1.2
1.2
—
—
—
0
0
(3014765) Yersinia sp identified in Stool by Organism specific culture
9
52
1.78
0.94
1.2
1.2
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
20
282
0.66
0.93
1.8
2.1
—
—
—
0
0
(3000850) Epithelial cells [#/volume] in Urine
33
250
1.42
0.92
2.1
2.4
e6/l
6.8
5.7
0.20
27
217
(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma
73
631
1.34
0.91
5.0
6.1
mmol/l
1.2
1.2
0.67
68
534
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
14
88
1.66
0.88
1.1
1.4
—
—
—
0
0
(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma
36
282
1.38
0.83
1.7
1.8
mg/l
0.9
0.9
0.06
26
227
(3019225) pH of Specimen
7
121
0.56
0.82
3.0
4.7
—
—
—
0
0
(3051387) C reactive protein [Mass/volume] in Capillary blood
0
27
0.00
0.78
0.0
4.0
—
33.2
—
0
15
(42529406) Shigella sp [Presence] in Stool by Culture
9
53
1.75
0.77
1.2
1.2
—
—
—
0
0
(3029937) Albumin [Presence] in Urine by Test strip
40
327
1.32
0.70
6.3
3.9
estimate
0.0
0.0
—
10
116
(3009445) Proteinase 3 Ab [Units/volume] in Serum
7
42
1.70
0.69
1.1
1.4
—
—
—
0
0
(3026493) Urate [Moles/volume] in Serum or Plasma
37
302
1.31
0.65
1.8
2.5
umol/l
309.0
7168.1
1.83
31
253
(3021589) Normoblasts [#/volume] in Blood
60
523
1.27
0.64
11.5
9.2
e9/l
0.0
0.0
0.60
47
431
(3017895) Helicobacter pylori Ab [Units/volume] in Serum
8
49
1.67
0.63
1.3
1.5
—
—
—
0
0
(3009542) Hematocrit [Volume Fraction] of Blood
113
1067
1.36
0.61
17.7
14.9
%
40.5
39.4
2.00
84
756
(3020630) Protein [Mass/volume] in Serum or Plasma
7
112
0.60
0.61
1.1
2.5
g/l
69.1
67.2
—
7
100
(3044927) Protein electrophoresis panel - Urine
0
20
0.00
0.61
0.0
1.1
—
—
—
0
0
(3012516) Albumin [Mass/volume] in Urine
41
344
1.28
0.59
3.0
3.0
mg/l
2137.2
22.6
0.50
24
193
(3024522) Salmonella sp identified in Specimen by Organism specific culture
0
23
0.00
0.59
0.0
1.2
—
—
—
0
0
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
28
223
1.32
0.59
1.7
1.4
—
—
—
0
0
(4034850)
6
35
1.75
0.58
10.5
7.4
—
—
—
0
0
(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting
119
1135
1.41
0.58
4.7
4.2
mmol/l
1.4
1.2
0.93
112
1037
(1761868) Lipid panel - Serum or Plasma
35
417
0.78
0.56
3.3
3.1
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
17
126
1.40
0.55
1.4
1.8
—
—
—
0
0
(3009508) Creatinine [Moles/volume] in Urine
42
357
1.26
0.54
3.0
2.9
mmol/l
5.7
6.4
0.65
35
286
(3013139) Helicobacter pylori Ag [Presence] in Stool
14
100
1.45
0.54
1.2
1.3
—
—
—
0
0
(3000620) Complement C3 [Mass/volume] in Serum or Plasma
6
39
1.56
0.53
1.0
1.2
g/l
1.3
1.2
—
6
39
(3049717) Cytology report of Urine Cyto stain
6
39
1.56
0.53
1.8
2.5
—
—
—
0
0
(3019060) Gas panel - Arterial blood
9
63
1.46
0.53
2.0
4.7
—
—
—
0
0
(4035726)
16
118
1.40
0.53
1.3
1.3
—
—
—
0
0
(3002179) Metamyelocytes/100 leukocytes in Blood
13
92
1.46
0.53
2.5
3.5
—
0.5
—
0
18
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
54
474
1.23
0.52
6.6
3.7
—
—
—
0
0
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
9
65
1.41
0.52
1.0
1.0
—
—
—
0
0
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
9
65
1.41
0.52
1.7
1.4
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
23
184
1.30
0.47
1.5
1.8
—
—
—
0
0
(3004588) Protein electrophoresis panel - Serum or Plasma
6
94
0.62
0.44
1.0
2.5
—
—
—
0
0
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
8
56
1.46
0.43
3.3
8.3
—
—
—
0
0
(3014051) Protein [Presence] in Urine by Test strip
5
32
1.58
0.42
2.6
1.8
—
—
—
0
0
(3027475) Erythrocytes [#/volume] in Cerebral spinal fluid
5
33
1.53
0.42
1.2
1.2
e6/l
75.4
98.8
—
5
28
(3027238) Thyroperoxidase Ab [Units/volume] in Serum or Plasma
12
88
1.40
0.41
1.2
1.2
iu/ml
81.9
172.5
—
7
38
(3023511) Choriogonadotropin [Units/volume] in Urine
0
15
0.00
0.41
0.0
1.2
—
—
—
0
0
(21494890) Protein electrophoresis panel - 24 hour Urine
0
15
0.00
0.41
0.0
1.6
—
—
—
0
0
(3021901) Oxygen saturation in Capillary blood
0
15
0.00
0.41
0.0
2.5
—
—
—
0
0
(3000492) Spirometry study
13
97
1.38
0.41
1.6
1.5
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
16
124
1.33
0.41
1.4
1.7
—
—
—
0
0
(4281824)
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
(3005570) Glucose [Moles/volume] in Urine
0
17
0.00
0.41
0.0
4.1
—
—
—
0
0
(44816559) Phosphatidylethanol [Mass/volume] in Blood
0
17
0.00
0.41
0.0
1.1
—
—
—
0
0
(3018171) Choriogonadotropin [Units/volume] in Serum or Plasma
0
17
0.00
0.41
0.0
1.8
—
20.7
—
0
6
(3001019) Free T4 and TSH panel - Serum or Plasma
8
61
1.33
0.40
1.9
2.0
—
—
—
0
0
(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum
0
19
0.00
0.39
0.0
1.1
—
—
—
0
0
(3014576) Chloride [Moles/volume] in Serum or Plasma
17
134
1.31
0.39
3.4
5.6
mmol/l
105.8
103.7
0.84
17
128
(3026989) Triiodothyronine (T3) Free [Moles/volume] in Serum or Plasma
9
68
1.35
0.38
2.3
3.3
pmol/l
4.2
4.4
—
9
60
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
10
72
1.42
0.38
1.6
1.5
—
—
—
0
0
(3006588) Cancer Ag 15-3 [Units/volume] in Serum or Plasma
6
47
1.29
0.32
6.3
3.3
u/ml
22.7
32.1
—
6
47
(3020682) Albumin/Creatinine [Ratio] in Urine
41
368
1.16
0.30
4.0
3.8
mg/mmol
14.2
5.4
0.32
22
198
(3045414) Leukocytes [Presence] in Urine
7
56
1.26
0.30
2.1
1.8
—
—
—
0
0
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
11
85
1.32
0.29
1.3
1.3
—
—
—
0
0
(3022250) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma by Lactate to pyruvate reaction
9
116
0.76
0.29
4.2
5.6
u/l
233.7
244.0
—
9
111
(3020961) Endomysium IgA Ab [Titer] in Serum
8
62
1.31
0.28
1.1
1.1
—
—
—
0
0
(3014111) Lactate [Moles/volume] in Serum or Plasma
11
86
1.30
0.27
2.5
6.8
mmol/l
1.4
1.3
0.15
11
81
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
59
549
1.13
0.26
3.8
3.8
—
—
—
0
0
(3018405) Lactate [Moles/volume] in Arterial blood
5
37
1.36
0.24
1.2
3.1
mmol/l
1.5
1.2
—
5
37
(3020891) Body temperature
5
39
1.29
0.23
1.8
3.6
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
30
269
1.15
0.22
4.0
3.5
—
—
—
0
0
(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection
0
11
0.00
0.21
0.0
1.7
—
—
—
0
0
(3036782) Glucose [Moles/volume] in Pleural fluid
0
11
0.00
0.21
0.0
1.1
—
6.9
—
0
11
(3009595) Pneumocystis jiroveci DNA [Presence] in Specimen by NAA with probe detection
0
11
0.00
0.21
0.0
1.4
—
—
—
0
0
(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma
0
11
0.00
0.21
0.0
1.4
—
2.9
—
0
11
(3028308) Erythrocytes [#/volume] in Pleural fluid
0
11
0.00
0.21
0.0
1.0
—
50598.0
—
0
5
(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection
0
11
0.00
0.21
0.0
1.7
—
—
—
0
0
(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection
0
11
0.00
0.21
0.0
1.7
—
—
—
0
0
(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection
0
11
0.00
0.21
0.0
1.9
—
—
—
0
0
(40766048) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum by Immunoassay
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
(3012441) Differential panel - Pleural fluid
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
(3037692) Legionella sp identified in Specimen by Organism specific culture
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
10
123
0.80
0.21
1.5
1.3
—
—
—
0
0
(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method
0
12
0.00
0.21
0.0
1.0
—
—
—
0
0
(4146454)
0
12
0.00
0.21
0.0
3.6
—
—
—
0
0
(3019601) Blood group antibody investigation [Interpretation] in Plasma or RBC
0
12
0.00
0.21
0.0
2.3
—
—
—
0
0
(3051611) Lipemic interference index of Serum or Plasma
0
12
0.00
0.21
0.0
2.7
—
—
—
0
0
(3008757) Leukocyte morphology finding [Identifier] in Blood
0
13
0.00
0.21
0.0
3.5
—
—
—
0
0
(3027544) Mycobacterium sp identified in Sputum by Organism specific culture
0
13
0.00
0.21
0.0
3.8
—
—
—
0
0
(46235355) HIV 1 and 2 tests - Meaningful Use set
15
127
1.20
0.20
1.8
1.4
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
34
372
0.89
0.20
2.0
2.1
—
—
—
0
0
(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection
0
14
0.00
0.20
0.0
1.2
—
—
—
0
0
(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection
0
14
0.00
0.20
0.0
1.2
—
—
—
0
0
(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood
6
51
1.18
0.19
2.0
2.2
%
0.9
1.2
—
6
51
(3014007) Fractional oxyhemoglobin in Arterial blood
7
60
1.18
0.18
2.4
8.3
%
95.7
94.0
—
7
60
(3022621) pH of Urine by Test strip
10
83
1.22
0.16
2.4
2.6
—
—
—
0
0
(3022145) Colonoscopy Study observation
18
160
1.14
0.15
1.3
1.3
—
—
—
0
0
(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma
14
156
0.89
0.10
6.7
6.0
—
—
—
0
0
(40761511) CBC panel - Blood by Automated count
124
1225
1.15
0.10
13.6
12.5
—
—
—
0
0
(40763571) Iron/Transferrin [Ratio] in Serum or Plasma
18
164
1.11
0.10
2.5
2.1
%
21.2
22.1
0.12
12
142
(3034860) Kappa light chains.free [Mass/volume] in Serum
5
43
1.17
0.10
1.2
3.9
mg/l
36.0
36.3
—
5
35
(3047169) Lambda light chains.free [Mass/volume] in Serum or Plasma
5
43
1.17
0.10
1.2
3.9
mg/l
19.8
24.9
—
5
34
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
6
54
1.12
0.09
1.0
2.2
—
—
—
0
0
(3034780) Angiotensin converting enzyme [Enzymatic activity/volume] in Serum or Plasma
6
56
1.07
0.09
3.3
1.9
u/l
39.8
39.9
—
6
50
(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma
49
472
1.06
0.08
3.2
3.4
ng/l
13.0
19.7
2.07
25
328
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
7
64
1.10
0.08
2.4
7.7
%
0.6
0.7
—
7
64
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
7
64
1.10
0.08
2.4
7.8
%
1.3
1.4
—
7
64
(3003458) Phosphate [Moles/volume] in Serum or Plasma
14
127
1.11
0.08
8.9
3.9
mmol/l
1.0
1.0
0.62
14
115
(3000330) Specific gravity of Urine by Test strip
7
66
1.06
0.08
8.1
3.2
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
7
66
1.06
0.08
1.6
1.5
—
—
—
0
0
(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma
33
346
0.94
0.07
1.9
2.8
ng/l
671.5
913.8
0.42
26
303
(3000991) Gas panel - Venous blood
8
75
1.07
0.07
2.9
7.6
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
8
75
1.07
0.07
2.7
2.4
—
—
—
0
0
(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)
114
1126
1.08
0.07
14.0
12.6
ml/min/173m2
81.5
78.5
1.03
99
926
(3024354) Oxygen [Partial pressure] in Venous blood
9
84
1.08
0.07
2.4
2.3
kpa
4.3
4.3
—
9
84
(3025941) Bacteria identified in Stool by Culture
9
86
1.05
0.07
1.3
1.3
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
8
94
0.84
0.07
1.7
1.7
—
—
—
0
0
(3017143) Hepatitis C virus Ab [Presence] in Serum
9
104
0.86
0.06
2.0
1.3
—
—
—
0
0
(3032080) INR in Blood by Coagulation assay
47
455
1.05
0.06
8.9
7.8
inr
1.0
1.2
1.38
21
137
(21494755) Public health laboratory ask at order entry panel
10
91
1.11
0.04
1.5
1.3
—
—
—
0
0
(3002256) Pathology report gross observation
15
158
0.94
0.02
1.2
1.2
—
—
—
0
0
(40761536) Microorganisms panel - Urine sediment
11
103
1.07
0.02
3.8
3.8
—
—
—
0
0
(3000067) Parathyrin.intact [Mass/volume] in Serum or Plasma
10
107
0.93
0.02
4.6
2.5
ng/l
106.0
69.5
—
10
93
(3003694) ABO and Rh group [Type] in Blood
29
296
0.97
0.00
1.5
1.4
—
—
—
0
0
(3021447) Carbon dioxide [Partial pressure] in Venous blood
10
98
1.02
0.00
4.3
2.5
kpa
6.3
6.0
—
10
98
(3041096) Erythrocytes [Presence] in Urine by Automated
34
344
0.98
0.00
4.8
3.4
—
—
—
0
0
(3012544) pH of Venous blood
10
105
0.95
0.00
4.3
2.4
—
—
—
0
0
(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3045716) Anion gap in Serum or Plasma
0
8
0.00
0.00
0.0
1.1
—
7.9
—
0
8
(3005719) IgG [Mass/volume] in Serum or Plasma
9
97
0.92
0.00
2.0
2.6
g/l
11.0
10.2
—
9
89
(3051651) Icteric interference index of Serum or Plasma
0
8
0.00
0.00
0.0
2.9
—
—
—
0
0
(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood
5
54
0.92
0.00
4.2
3.1
%
47.7
44.8
—
5
54
(3027273) Bicarbonate [Moles/volume] in Venous blood
5
54
0.92
0.00
6.0
2.4
mmol/l
26.0
25.8
—
5
54
(3035947) Staphylolysin Ab [Units/volume] in Serum
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(1002224) Polysomnography panel
5
50
1.00
0.00
1.0
1.1
—
—
—
0
0
(3030558) Cytomegalovirus DNA [Units/volume] (viral load) in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(3050898) Methicillin resistant Staphylococcus aureus [Presence] in Genital specimen by Organism specific culture
0
8
0.00
0.00
0.0
2.6
—
—
—
0
0
(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count
0
8
0.00
0.00
0.0
5.3
—
—
—
0
0
(3000208) Alpha tocopherol [Moles/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
1.4
—
32.0
—
0
8
(3042975) Streptococcus sp identified in Isolate by Organism specific culture
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3051593) INR in Capillary blood by Coagulation assay
0
8
0.00
0.00
0.0
15.4
—
—
—
0
0
(3015183) Erythrocyte sedimentation rate
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma
0
8
0.00
0.00
0.0
1.4
—
—
—
0
0
(4027681)
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
(3026470) Cobalt [Mass/volume] in Blood
0
7
0.00
0.00
0.0
2.1
—
2.9
—
0
7
(3001893) Eosinophils/100 leukocytes in Pleural fluid
0
5
0.00
0.00
0.0
1.2
—
0.7
—
0
5
(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(37020957) Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
(3010375) cycloSPORINE [Mass/volume] in Blood
0
6
0.00
0.00
0.0
22.5
—
77.7
—
0
6
(3035880) pH of Pleural fluid
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3019897) Erythrocyte distribution width [Ratio] by Automated count
0
9
0.00
0.00
0.0
3.0
—
13.4
—
0
9
(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.5
—
88.1
—
0
6
(3035320) C reactive protein [Mass/volume] in Body fluid
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
(3047189) Immunofixation for 24 hour Urine
0
7
0.00
0.00
0.0
1.7
—
—
—
0
0
(42868421) Varicella zoster virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3045066) Thymidine kinase [Enzymatic activity/volume] in Serum
0
9
0.00
0.00
0.0
1.3
—
27.8
—
0
9
(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(44806420)
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3013637) Mi-2 Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(42528593) TIF1-gamma Ab [Presence] in Serum by Line blot
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(40768806) Pleura Pathology biopsy report
0
9
0.00
0.00
0.0
1.3
—
—
—
0
0
(3011363) Streptococcus pneumoniae Ag [Presence] in Urine
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3028531) Enolase.neuron specific [Mass/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.7
—
21.2
—
0
6
(3035933) Granulocytes/100 leukocytes in Blood
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
(37021247) Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(42529598) SUMO-activating enzyme subunit 1 Ab [Presence] in Serum by Line blot
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3044212) Herpes simplex virus 1+2 IgM Ab [Presence] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3019977) pH of Arterial blood
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
(3014271) Vancomycin [Susceptibility]
0
9
0.00
0.00
0.0
2.4
—
—
—
0
0
(3045788) Cell count panel - Pleural fluid
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
(3016038) Potassium [Moles/volume] in Urine
0
6
0.00
0.00
0.0
1.0
—
27.3
—
0
6
(3004451) EKG impression Narrative
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(40763082) Lactate dehydrogenase [Enzymatic activity/volume] in Pleural fluid by Lactate to pyruvate reaction
0
9
0.00
0.00
0.0
1.2
—
241.9
—
0
9
(3001964) Herpes simplex virus Ag [Presence] in Specimen
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3026515) Parvovirus B19 IgM Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3013293) Extractable nuclear Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(42869457) Rotavirus RNA [Identifier] in Stool by NAA with probe detection
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3013180) HIV 1 RNA [Units/volume] (viral load) in Serum or Plasma by Probe with amplification
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3002148) Methylenedioxymethamphetamine [Presence] in Urine by Screen method
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(40761849) Varicella zoster virus IgG Ab [Units/volume] in Cerebral spinal fluid by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3024666) Lithium, Blood [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
7.9
—
0.7
—
0
7
(3002823) Mycoplasma pneumoniae IgG Ab [Units/volume] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3028433) Virus identified in Specimen by Culture
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
(40765096) Chromosome analysis panel by Banding
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3012220) Varicella zoster virus IgM Ab [Presence] in Serum by Immunoassay
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(42529582) MDA5 Ab [Presence] in Serum by Line blot
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3000093) Morphology [Interpretation] in Blood Narrative
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3014148) Varicella zoster virus Ab [Titer] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(37020445) Astrovirus RNA [Presence] in Stool by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3009550) Parvovirus B19 IgG Ab [Titer] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3028026) IgM [Mass/volume] in Serum or Plasma
8
81
0.99
0.00
1.6
1.8
g/l
2.5
1.6
—
8
73
(3016724) Homocysteine [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.4
—
11.5
—
0
7
(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3037677) Mycoplasma pneumoniae IgM Ab [Titer] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3036428) Adenosine deaminase [Enzymatic activity/volume] in Pleural fluid
0
6
0.00
0.00
0.0
1.0
—
17.7
—
0
6
(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(3016894) Varicella zoster virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
(42869593) Oxyhemoglobin/Hemoglobin.total [Pure mass fraction] in Capillary blood
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3000919) Neutrophils/100 leukocytes in Pleural fluid
0
5
0.00
0.00
0.0
1.2
—
14.4
—
0
5
(3041145) Herpes simplex virus IgM Ab [Presence] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: VAGINAL_LICHEN_PLANUS – Vaginal lichen planus

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).