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This is a non-core endpoint: only basic statistics are computed.

Toxic effect of pesticides

Endpoint Browser

ST19_TOXIC_EFFECT_PESTI

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — T60
  • Cause of death: ICD-10 — T60

2 out of 7 registries used, show all original rules.

29

4. Check minimum number of events

None

29

5. Include endpoints

None

29

6. Filter based on genotype QC (FinnGen only)

29

Control definitions (FinnGen only)

Control exclude
ST19_TOXIC_EFFEC_SUBST_CHIEF_NONME_SOURCE

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
T5[1-9]|T6[0-5]
Name in latin
Effectus toxicus pesticidorum

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 29 19 10
Unadjusted period prevalence (%) 0.01 0.01 0.00
Median age at first event (years) 46.86 42.39 55.34

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3007853) Bacteria identified in Skin by Aerobe culture
7
19
4.50
2.32
1.9
1.5
—
—
—
0
0
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
5
9
6.43
2.31
1.0
1.9
—
—
—
0
0
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
7
21
4.05
2.12
3.9
4.2
—
—
—
0
0
(3013139) Helicobacter pylori Ag [Presence] in Stool
5
14
4.08
1.69
1.2
1.2
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
13
68
2.65
1.67
3.1
2.3
—
—
—
0
0
(40761511) CBC panel - Blood by Automated count
22
262
0.34
1.57
23.6
12.7
—
—
—
0
0
(3022145) Colonoscopy Study observation
6
22
3.16
1.52
1.7
1.3
—
—
—
0
0
(40768797) Stomach Pathology biopsy report
7
31
2.65
1.20
1.1
1.3
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
9
47
2.32
1.16
3.0
2.2
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
7
35
2.31
1.09
1.6
1.6
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
10
56
2.20
1.03
3.7
4.2
—
—
—
0
0
(3032080) INR in Blood by Coagulation assay
13
83
2.03
0.96
19.9
8.0
inr
1.3
1.1
—
5
27
(3012516) Albumin [Mass/volume] in Urine
10
58
2.11
0.94
2.2
2.9
mg/l
34.5
91.3
—
5
38
(3037467) Urinalysis macro (dipstick) panel - Urine
21
165
1.98
0.93
4.1
3.8
—
—
—
0
0
(3017181) Myelocytes/100 leukocytes in Blood
0
24
0.00
0.83
0.0
3.0
—
0.7
—
0
7
(3021440) Promyelocytes/100 leukocytes in Blood
0
24
0.00
0.83
0.0
3.0
—
0.4
—
0
7
(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma
0
27
0.00
0.82
0.0
7.1
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
12
79
1.89
0.79
3.1
2.6
—
—
—
0
0
(3012544) pH of Venous blood
5
27
2.02
0.72
2.8
1.8
—
—
—
0
0
(3013512) EKG study
10
66
1.79
0.63
5.6
3.0
—
—
—
0
0
(3015736) pH of Urine
12
84
1.73
0.62
4.3
3.4
—
—
—
0
0
(3025159) Blasts/100 leukocytes in Blood
0
22
0.00
0.62
0.0
3.0
—
0.0
—
0
5
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
22
0.00
0.62
0.0
1.6
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
9
62
1.65
0.61
2.4
2.7
—
—
—
0
0
(40768804) Tissue Pathology biopsy report
13
94
1.69
0.60
2.4
1.7
—
—
—
0
0
(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma
12
87
1.65
0.53
4.8
2.9
u/l
51.5
58.5
0.42
12
80
(3002256) Pathology report gross observation
5
30
1.80
0.46
1.2
1.1
—
—
—
0
0
(3004410) Hemoglobin A1c/Hemoglobin.total in Blood
20
221
0.69
0.43
7.9
4.8
mmol/mol
44.1
38.6
0.87
20
213
(3008898) HLA-B27 [Presence]
0
15
0.00
0.42
0.0
1.1
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
0
16
0.00
0.42
0.0
1.3
—
—
—
0
0
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
5
35
1.52
0.41
2.6
1.8
—
—
—
0
0
(3004588) Protein electrophoresis panel - Serum or Plasma
0
18
0.00
0.41
0.0
1.1
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
6
87
0.61
0.41
3.5
2.9
—
—
—
0
0
(3018095) Leukocytes [#/volume] in Urine
11
84
1.50
0.37
3.4
3.0
e6/l
142.5
20.8
—
6
63
(3019900) Cholesterol [Moles/volume] in Serum or Plasma
22
239
0.67
0.35
4.7
4.5
mmol/l
4.2
4.7
1.63
22
223
(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma
22
238
0.69
0.35
4.6
4.4
mmol/l
1.3
1.5
2.24
22
221
(3002385) Erythrocyte distribution width [Ratio]
19
214
0.67
0.34
30.3
16.1
%
14.4
13.7
0.80
19
214
(3026008) Bacteria identified in Urine by Culture
10
76
1.48
0.34
4.2
2.9
—
—
—
0
0
(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting
21
229
0.70
0.32
4.3
3.9
mmol/l
1.4
1.3
0.24
21
212
(3003694) ABO and Rh group [Type] in Blood
5
71
0.64
0.30
1.0
1.5
—
—
—
0
0
(40758558) Short blood count panel - Blood
9
73
1.34
0.30
19.6
6.0
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
14
117
1.38
0.28
6.5
4.0
—
—
—
0
0
(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma
20
178
1.40
0.26
4.9
3.1
u/l
53.3
56.9
0.07
20
167
(3011397) Hemoglobin [Presence] in Urine by Test strip
5
41
1.26
0.23
4.6
3.7
—
—
—
0
0
(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma
23
244
0.72
0.22
4.9
5.0
mmol/l
2.6
2.8
0.43
23
228
(46235355) HIV 1 and 2 tests - Meaningful Use set
6
47
1.35
0.22
2.5
2.0
—
—
—
0
0
(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma
6
49
1.28
0.22
1.0
1.3
—
23.9
—
0
21
(3023465) Gamma globulin [Mass/volume] in Serum or Plasma by Electrophoresis
0
11
0.00
0.22
0.0
1.1
—
11.2
—
0
11
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
(3001019) Free T4 and TSH panel - Serum or Plasma
0
11
0.00
0.22
0.0
1.7
—
—
—
0
0
(3050129) First trimester maternal screen panel - Serum or Plasma
0
10
0.00
0.22
0.0
1.5
—
—
—
0
0
(3015322) Alpha 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
0
10
0.00
0.22
0.0
1.0
—
3.0
—
0
10
(3028286) Albumin [Mass/volume] in Serum or Plasma by Electrophoresis
0
10
0.00
0.22
0.0
1.0
—
39.6
—
0
10
(3029713) Protein.monoclonal band 1 [Mass/volume] in Serum or Plasma by Electrophoresis
0
10
0.00
0.22
0.0
1.0
—
0.0
—
0
10
(3035797) Protein.monoclonal band 2 [Mass/volume] in Serum or Plasma by Electrophoresis
0
10
0.00
0.22
0.0
1.0
—
0.0
—
0
10
(3012336) Haptoglobin [Mass/volume] in Serum or Plasma
0
12
0.00
0.21
0.0
2.8
—
1.6
—
0
12
(40768443) Skin Pathology biopsy report
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection
0
13
0.00
0.21
0.0
2.2
—
—
—
0
0
(4010399)
0
14
0.00
0.20
0.0
1.2
—
—
—
0
0
(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma
0
14
0.00
0.20
0.0
1.5
—
—
—
0
0
(3021589) Normoblasts [#/volume] in Blood
13
115
1.24
0.14
14.2
8.1
e9/l
0.0
0.0
—
8
93
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
6
56
1.09
0.09
1.5
1.7
—
—
—
0
0
(3009542) Hematocrit [Volume Fraction] of Blood
24
231
1.23
0.09
21.3
12.7
%
37.2
39.5
0.31
14
176
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
10
93
1.11
0.02
4.4
3.8
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
18
175
1.08
0.00
4.0
2.9
—
—
—
0
0
(3044889) 12 lead EKG panel
17
175
0.93
0.00
4.9
3.5
—
—
—
0
0
(3023150) Myeloperoxidase Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3050238) Crystals [Presence] in Synovial fluid by Light microscopy
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3006999) Ribonucleoprotein extractable nuclear Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay
0
9
0.00
0.00
0.0
1.9
—
—
—
0
0
(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3044290) Cell count panel - Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3015171) Extractable nuclear Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3010566) Parathyrin.intact [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
5.8
—
—
—
0
0
(3023420) DNA double strand Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3019145) Choriogonadotropin.beta subunit free [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(42529201) Cancer Ag 19-9 [Units/volume] in Serum or Plasma by Immunoassay
0
7
0.00
0.00
0.0
5.0
—
197.3
—
0
7
(3016650) Hepatitis A virus Ab [Presence] in Serum
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3029338) Protein.monoclonal band 3 [Mass/volume] in Serum or Plasma by Electrophoresis
0
9
0.00
0.00
0.0
1.0
—
0.0
—
0
9
(3030905) Polymorphonuclear cells [#/volume] in Blood
0
6
0.00
0.00
0.0
4.7
—
7.4
—
0
6
(3006598) pH of Arterial cord blood
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma
0
9
0.00
0.00
0.0
1.9
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
7
77
0.88
0.00
3.6
3.4
—
—
—
0
0
(44816844) Macroprolactin [Units/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(42870588) Differential panel, method unspecified - Blood
9
92
0.97
0.00
10.8
5.2
—
—
—
0
0
(42529215) Follitropin [Units/volume] in Serum or Plasma by Immunoassay
0
7
0.00
0.00
0.0
2.0
—
28.3
—
0
7
(3012110) Lysozyme [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
2.1
—
13.8
—
0
7
(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
(3026179) Normetanephrine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
0.4
—
0
5
(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3024403) Complement+Immunoglobulin [Units/volume] in Red Blood Cells
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
(3012413) Glucose [Moles/volume] in Serum or Plasma --2 hours post meal
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3030408) 3-Methoxytyramine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3004959) Base excess in Arterial cord blood by calculation
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3014702) Chromogranin A [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.1
—
4.0
—
0
7
(3019250) Coagulation factor VIII activity actual/normal in Platelet poor plasma by Coagulation assay
0
7
0.00
0.00
0.0
2.4
—
187.7
—
0
7
(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(40760888) Immunoglobulin light chains.free panel - Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3021952) Alkaline phosphatase isoenzymes [Enzymatic activity/volume] in Serum or Plasma by Heat stability
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3029634) Reagin Ab [Titer] in Serum by VDRL
0
5
0.00
0.00
0.0
2.4
—
—
—
0
0
(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3027450) Sjogrens syndrome-B extractable nuclear Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3019150) Specific gravity of Urine by Refractometry
5
51
0.98
0.00
8.4
4.3
—
1.0
—
0
9
(4268621)
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(3025245) SCL-70 extractable nuclear Ab [Units/volume] in Serum by Immunoassay
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection
0
9
0.00
0.00
0.0
1.4
—
—
—
0
0
(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis
0
9
0.00
0.00
0.0
1.0
—
0.0
—
0
9
(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination
0
5
0.00
0.00
0.0
2.4
—
—
—
0
0
(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3032035) Polymorphonuclear cells/100 leukocytes in Blood
0
6
0.00
0.00
0.0
5.0
—
65.5
—
0
6
(4062490)
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3028626) Oxygen [Partial pressure] in Capillary blood
0
9
0.00
0.00
0.0
12.0
—
8.4
—
0
9
(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3004383) Neutrophil cytoplasmic Ab.classic [Titer] in Serum by Immunofluorescence
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3036086) Jo-1 extractable nuclear Ab [Units/volume] in Serum by Immunoassay
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3015816) F5 gene p.Arg506Gln [Presence] in Blood or Tissue by Molecular genetics method
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection
0
9
0.00
0.00
0.0
1.6
—
—
—
0
0
(4306422)
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection
0
9
0.00
0.00
0.0
1.6
—
—
—
0
0
(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3007778) Kappa light chains/Lambda light chains [Mass Ratio] in Serum
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay
0
8
0.00
-0.00
0.0
1.5
—
—
—
0
0
(3000515) Antithrombin actual/normal in Platelet poor plasma by Chromogenic method
0
8
0.00
-0.00
0.0
2.1
—
94.1
—
0
8
(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
-0.00
0.0
1.6
—
—
—
0
0
(3024891) Influenza virus A+B Ag [Presence] in Specimen
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: ST19_TOXIC_EFFECT_PESTI – Toxic effect of pesticides

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).