This is a non-core endpoint: only basic statistics are computed.
Toxic effect of metals
ST19_TOXIC_EFFECT_METALS
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
23 |
4. Check minimum number of eventsNone |
23 |
5. Include endpointsNone |
23 |
6. Filter based on genotype QC (FinnGen only) |
23 |
Control definitions (FinnGen only)
- Control exclude
- ST19_TOXIC_EFFEC_SUBST_CHIEF_NONME_SOURCE
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF4
- Parent code in ICD-10
- T5[1-9]|T6[0-5]
- Name in latin
- Effectus toxicus metallorum
Similar endpoints
↥List of similar endpoints to
Toxic effect of metals
based on the number of shared cases.
Similar with more cases:
- Toxic effects of substances chiefly nonmedicinal as to source
- Injury, poisoning and certain other consequences of external causes
- Any event in hilmo or specialist outpatient
- Any prescribed medicine buy
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 23 | 8 | 15 |
| Unadjusted period prevalence (%) | 0.01 | 0.00 | 0.01 |
| Median age at first event (years) | 47.14 | 38.30 | 51.85 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3022145) Colonoscopy Study observation
5
17
3.45
1.44
1.0
1.5
—
—
—
0
0
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
6
26
2.75
1.28
1.2
1.7
—
—
—
0
0
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
0
30
0.00
1.06
0.0
1.7
—
—
—
0
0
(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma
10
57
2.33
1.04
3.0
1.6
u/l
307.7
222.9
—
10
51
(3023368) Bacteria identified in Blood by Culture
8
43
2.31
1.01
3.0
4.4
—
—
—
0
0
(3017143) Hepatitis C virus Ab [Presence] in Serum
0
24
0.00
0.85
0.0
1.7
—
—
—
0
0
(40760892) CBC W Ordered Manual Differential panel - Blood
7
41
2.01
0.79
4.1
7.6
—
—
—
0
0
(3013826) Glucose [Moles/volume] in Serum or Plasma
14
105
1.85
0.72
4.6
4.0
mmol/l
7.9
6.4
0.83
14
99
(3011397) Hemoglobin [Presence] in Urine by Test strip
6
35
1.96
0.64
4.3
3.5
—
—
—
0
0
(3013512) EKG study
8
56
1.65
0.50
2.0
6.5
—
—
—
0
0
(3021879) Hepatitis B virus core Ab [Presence] in Serum
0
16
0.00
0.43
0.0
1.7
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
15
124
1.60
0.42
2.5
2.9
—
—
—
0
0
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
0
18
0.00
0.41
0.0
1.6
—
—
—
0
0
(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma
6
43
1.53
0.39
4.7
1.5
mg/l
6.7
3.6
—
6
37
(3001122) Ferritin [Mass/volume] in Serum or Plasma
9
71
1.44
0.32
4.7
2.0
ug/l
111.8
96.9
—
9
60
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
9
71
1.44
0.32
2.1
2.9
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
5
40
1.32
0.24
3.4
3.2
—
—
—
0
0
(3031040) Bacteria [#/volume] in Urine by Automated count
12
101
1.39
0.23
4.2
4.1
—
—
—
0
0
(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum
0
11
0.00
0.22
0.0
2.3
—
—
—
0
0
(3000330) Specific gravity of Urine by Test strip
0
11
0.00
0.22
0.0
6.1
—
—
—
0
0
(3017895) Helicobacter pylori Ab [Units/volume] in Serum
0
12
0.00
0.22
0.0
1.4
—
—
—
0
0
(3002256) Pathology report gross observation
0
12
0.00
0.22
0.0
1.2
—
—
—
0
0
(3003284) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum by Immunofluorescence
0
12
0.00
0.22
0.0
1.7
—
—
—
0
0
(3004588) Protein electrophoresis panel - Serum or Plasma
0
13
0.00
0.21
0.0
4.1
—
—
—
0
0
(40768804) Tissue Pathology biopsy report
7
57
1.33
0.21
2.0
2.5
—
—
—
0
0
(3030981) Hyaline casts [#/volume] in Urine by Automated count
0
14
0.00
0.21
0.0
2.4
—
0.1
—
0
14
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
5
42
1.24
0.11
2.6
3.4
—
—
—
0
0
(40758558) Short blood count panel - Blood
5
44
1.17
0.11
13.4
7.1
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
6
52
1.21
0.10
1.8
2.7
—
—
—
0
0
(3015377) Calcium [Moles/volume] in Serum or Plasma
7
64
1.13
0.09
4.1
2.8
mmol/l
2.4
2.3
—
7
55
(3015736) pH of Urine
7
66
1.09
0.09
3.9
3.9
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
8
74
1.12
0.09
2.3
2.6
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
8
87
0.88
0.08
3.5
4.2
—
—
—
0
0
(3037467) Urinalysis macro (dipstick) panel - Urine
12
115
1.09
0.00
3.7
4.5
—
—
—
0
0
(3044889) 12 lead EKG panel
11
112
0.97
0.00
4.1
3.7
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
6
57
1.07
0.00
2.2
3.4
—
—
—
0
0
(3035797) Protein.monoclonal band 2 [Mass/volume] in Serum or Plasma by Electrophoresis
0
7
0.00
0.00
0.0
1.3
—
0.0
—
0
7
(3008909) Norovirus RNA [Presence] in Stool by NAA with probe detection
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3002523) Influenza virus A Ag [Presence] in Specimen
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3016407) Fibrinogen [Mass/volume] in Platelet poor plasma by Coagulation assay
0
5
0.00
0.00
0.0
1.2
—
3.1
—
0
5
(3047007) Chlamydophila sp Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(40766189) Gliadin peptide IgG Ab [Units/volume] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
2.0
—
—
—
0
0
(3008037) Lactate [Moles/volume] in Venous blood
0
8
0.00
0.00
0.0
8.0
—
1.5
—
0
8
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
0
8
0.00
0.00
0.0
2.4
—
—
—
0
0
(3029338) Protein.monoclonal band 3 [Mass/volume] in Serum or Plasma by Electrophoresis
0
6
0.00
0.00
0.0
1.0
—
0.0
—
0
6
(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum
0
9
0.00
0.00
0.0
1.6
—
—
—
0
0
(3044290) Cell count panel - Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(3043109) Cytology report of Tissue fine needle aspirate Cyto stain
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
0
8
0.00
0.00
0.0
8.3
—
—
—
0
0
(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(3042111) Morphology [Interpretation] in Bone marrow Narrative
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(3007778) Kappa light chains/Lambda light chains [Mass Ratio] in Serum
0
5
0.00
0.00
0.0
6.8
—
—
—
0
0
(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(3005895) Myoglobin [Mass/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
2.3
—
310.1
—
0
6
(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3039443) Prostate specific Ag panel - Serum or Plasma
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
(3020961) Endomysium IgA Ab [Titer] in Serum
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3012110) Lysozyme [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.3
—
11.3
—
0
7
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
7
73
0.94
0.00
3.6
4.1
—
—
—
0
0
(3033705) Calcium.ionized [Moles/volume] in Venous blood
0
5
0.00
0.00
0.0
6.4
—
—
—
0
0
(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3034770) Mitochondria Ab [Titer] in Serum
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3038515) Glucose [Moles/volume] in Venous blood
0
8
0.00
0.00
0.0
8.0
—
6.6
—
0
8
(3041354) Potassium [Moles/volume] in Venous blood
0
5
0.00
0.00
0.0
6.4
—
3.9
—
0
5
(3004383) Neutrophil cytoplasmic Ab.classic [Titer] in Serum by Immunofluorescence
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3050238) Crystals [Presence] in Synovial fluid by Light microscopy
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis
0
6
0.00
0.00
0.0
1.0
—
0.0
—
0
6
(3013527) Hepatitis B virus core IgM Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3028286) Albumin [Mass/volume] in Serum or Plasma by Electrophoresis
0
6
0.00
0.00
0.0
1.0
—
38.0
—
0
6
(3019473) Protein [Mass/volume] in Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.3
—
370.0
—
0
6
(3035285) Chloride [Moles/volume] in Venous blood
0
5
0.00
0.00
0.0
6.4
—
106.2
—
0
5
(1761482) Bacteria [#/volume] in Urine by Culture
0
9
0.00
0.00
0.0
5.8
—
—
—
0
0
(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(3012336) Haptoglobin [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.7
—
1.6
—
0
7
(3020044) Glucose [Moles/volume] in Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.3
—
3.8
—
0
6
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
0
9
0.00
0.00
0.0
1.6
—
—
—
0
0
(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma
0
9
0.00
0.00
0.0
2.2
—
182.4
—
0
9
(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(40768443) Skin Pathology biopsy report
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3038177) Helicobacter pylori Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3003740) Influenza virus B Ag [Presence] in Specimen
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
2.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: ST19_TOXIC_EFFECT_METALS – Toxic effect of metals
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).