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Other sex chromosome abnormalities, male phenotype, not elsewhere classified

Endpoint Browser PheWeb

Q17_OTHER_SEX_CHROMOSOME_ABNORMALITI_MALE_PHENOT_NOT_ELSEW_CLASSIFIED

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

only males

226837

2. Check conditions

None

226837

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — Q98
  • Cause of death: ICD-10 — Q98

2 out of 7 registries used, show all original rules.

122

4. Check minimum number of events

None

122

5. Include endpoints

None

122

6. Filter based on genotype QC (FinnGen only)

122

Control definitions (FinnGen only)

Control exclude
Q17_CHROMOSOMAL_ABNORMALITI_NOT_ELSEW_CLASSIFIED

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF12
Parent code in ICD-10
Q9
Name in latin
Aliae abnormitates chromosomatum sexualium patientis phaenotypo masculini non alibi classificatae

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 122 - 122
Unadjusted period prevalence (%) 0.05 - 0.05
Median age at first event (years) 28.30 - 28.30

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
112
Matched controls
1121
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q98.0
ICD-10 Finland
Klinefelter syndrome karyotype 47,XXY
+∞
81.5
68
*
121
Kela drug reimbursment
Severe hypofunction of sexual glands
428.5
53.0
49
*
Q98.4
ICD-10 Finland
Klinefelter syndrome, unspecified
+∞
46.1
41
*
G03BA03
ATC
testosterone; systemic, rectal, sublingual, transdermal
31.2
42.0
58
37
Q98.5
ICD-10 Finland
Karyotype 47,XYY
+∞
21.5
20
*
Z31.5
ICD-10 Finland
Genetic counselling
12.5
18.7
35
39
N46
ICD-10 Finland
Male infertility
16.5
17.4
28
22
E29.1
ICD-10 Finland
Testicular hypofunction
26.6
14.8
20
9
Q98.8
ICD-10 Finland
Other specified sex chromosome abnormalities, male phenotype
+∞
13.8
13
*
Q98.6
ICD-10 Finland
Male with structurally abnormal sex chromosome
+∞
10.6
10
*
Y28
ICPC
Limited function/disability (Y)
30.2
8.7
11
*
KFB01
NOMESCO Finland
Microscope-assisted testicular biopsy for assisted reproduction treatments
+∞
8.4
8
*
T28
ICPC
Limited function/disability (T)
48.5
7.8
9
*
L02BG04
ATC
letrozole; oral
27.2
7.7
10
*
WYA30
NOMESCO Finland
Preparations for expected poor cooperation
5.0
6.3
20
47
Q98.1
ICD-10 Finland
Klinefelter syndrome, male with more than two X chromosomes
+∞
6.3
6
*

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3017446) Testosterone [Moles/volume] in Serum or Plasma
77
172
10.43
38.81
5.7
2.5
nmol/l
13.1
16.1
2.84
71
163
(3009214) Lutropin [Units/volume] in Serum or Plasma
40
57
9.95
28.64
3.0
1.5
u/l
12.4
3.7
4.27
30
46
(3023323) Follitropin [Units/volume] in Serum or Plasma
26
30
10.74
21.48
2.5
1.6
iu/l
24.6
7.5
2.68
18
20
(40765089) Chromosome analysis panel - Blood by G-banded
15
14
12.08
14.03
1.0
1.0
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
27
88
3.66
7.28
1.8
2.5
—
—
—
0
0
(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma
38
173
2.74
5.75
2.1
2.7
mg/l
1.1
0.9
0.20
29
127
(3022217) INR in Platelet poor plasma by Coagulation assay
17
57
3.30
4.32
23.8
12.7
—
1.2
—
0
8
(3018418) pH of Serum or Plasma
38
198
2.34
4.20
3.4
3.4
ph
7.4
7.4
1.08
12
33
(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma
44
253
2.16
3.79
2.8
3.2
%
25.9
22.2
0.96
13
80
(3023103) Potassium [Moles/volume] in Serum or Plasma
110
910
3.12
3.72
15.7
12.2
mmol/l
4.0
4.0
0.10
105
892
(40761511) CBC panel - Blood by Automated count
115
1003
3.55
3.52
13.4
9.1
—
—
—
0
0
(3007853) Bacteria identified in Skin by Aerobe culture
23
103
2.52
3.49
3.0
1.8
—
—
—
0
0
(3013826) Glucose [Moles/volume] in Serum or Plasma
69
483
1.99
3.39
4.9
6.3
mmol/l
6.5
6.6
0.16
62
463
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
34
190
2.09
3.08
2.0
1.6
pmol/l
103.2
97.9
0.17
19
102
(46235355) HIV 1 and 2 tests - Meaningful Use set
41
248
1.98
2.99
2.0
2.2
—
—
—
0
0
(3021589) Normoblasts [#/volume] in Blood
64
454
1.86
2.86
9.0
9.1
e9/l
0.0
0.0
0.50
53
363
(40758558) Short blood count panel - Blood
42
268
1.86
2.57
4.5
7.4
—
—
—
0
0
(3017143) Hepatitis C virus Ab [Presence] in Serum
31
181
1.96
2.46
1.4
1.7
—
—
—
0
0
(3032080) INR in Blood by Coagulation assay
41
266
1.82
2.35
15.9
5.8
inr
1.3
1.2
0.37
15
79
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
30
176
1.93
2.34
1.4
1.6
—
—
—
0
0
(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma
32
192
1.90
2.34
1.9
2.3
ug/l
0.5
0.6
0.73
24
87
(44816844) Macroprolactin [Units/volume] in Serum or Plasma
6
13
4.79
2.30
1.5
1.5
—
—
—
0
0
(3013650) Neutrophils [#/volume] in Blood by Automated count
73
564
1.73
2.26
8.5
10.9
e9/l
3.8
4.0
0.24
65
495
(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis
5
9
5.74
2.23
1.0
4.1
g/l
0.0
0.0
—
5
9
(3001604) Monocytes [#/volume] in Blood
66
498
1.71
2.21
5.2
7.2
e9/l
0.6
0.6
0.26
58
435
(3006315) Basophils [#/volume] in Blood
66
499
1.70
2.18
5.1
7.2
e9/l
0.0
0.0
0.08
58
436
(3005895) Myoglobin [Mass/volume] in Serum or Plasma
7
19
3.84
2.18
4.1
2.8
ug/l
88.0
93.8
—
7
19
(3015816) F5 gene p.Arg506Gln [Presence] in Blood or Tissue by Molecular genetics method
7
19
3.84
2.18
1.6
1.3
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
34
214
1.82
2.13
2.9
2.9
—
—
—
0
0
(3036481) Cortisol [Moles/volume] in Serum or Plasma
17
83
2.22
2.13
2.4
2.0
nmol/l
359.3
333.6
0.37
17
73
(3020460) C reactive protein [Mass/volume] in Serum or Plasma
109
960
2.27
2.12
14.8
10.8
mg/l
17.5
23.3
1.53
83
705
(3019198) Lymphocytes [#/volume] in Blood
67
512
1.68
2.10
5.3
7.4
e9/l
1.9
2.0
0.24
61
452
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
22
120
2.02
2.10
2.5
3.0
e6/l
1.3
0.3
—
10
64
(42870588) Differential panel, method unspecified - Blood
48
336
1.71
2.09
5.8
7.4
—
—
—
0
0
(4268621)
6
15
4.15
2.06
3.8
2.7
—
—
—
0
0
(3042936) Bacteria identified in Isolate by Culture
22
122
1.98
2.01
3.0
2.4
—
—
—
0
0
(3013115) Eosinophils [#/volume] in Blood
66
507
1.66
2.00
6.7
8.0
e9/l
0.2
0.2
0.87
60
449
(3000515) Antithrombin actual/normal in Platelet poor plasma by Chromogenic method
11
45
2.59
1.99
4.5
6.0
%
99.1
85.4
1.16
11
45
(3037467) Urinalysis macro (dipstick) panel - Urine
65
499
1.65
1.96
3.4
3.4
—
—
—
0
0
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
22
123
1.96
1.96
2.5
3.0
e6/l
0.8
0.4
—
10
66
(3028271) Lactate [Moles/volume] in Capillary blood
5
11
4.69
1.96
2.0
1.7
mmol/l
1.5
1.7
—
5
11
(3015235) Bicarbonate [Moles/volume] in Capillary blood
6
16
3.89
1.96
3.0
2.4
mmol/l
23.3
24.4
—
6
16
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
40
273
1.69
1.88
3.1
3.0
—
—
—
0
0
(4306422)
6
17
3.65
1.86
1.7
1.5
—
—
—
0
0
(3038177) Helicobacter pylori Ab [Presence] in Serum
5
12
4.29
1.84
1.2
1.0
—
—
—
0
0
(3021879) Hepatitis B virus core Ab [Presence] in Serum
22
126
1.91
1.83
1.4
1.6
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
16
83
2.07
1.74
1.7
1.8
—
—
—
0
0
(3030467) Casts [#/volume] in Urine by Automated count
32
211
1.70
1.69
3.1
3.0
e6/l
0.4
0.3
0.04
23
160
(3014765) Yersinia sp identified in Stool by Organism specific culture
7
25
2.91
1.67
1.1
1.0
—
—
—
0
0
(42529406) Shigella sp [Presence] in Stool by Culture
7
25
2.91
1.67
1.1
1.0
—
—
—
0
0
(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma
17
92
1.99
1.66
1.5
3.0
mmol/l
2.4
2.4
1.16
17
82
(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)
92
789
1.68
1.65
13.9
9.4
ml/min/173m2
93.3
96.1
0.50
75
634
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
5
14
3.68
1.63
1.0
3.2
—
—
—
0
0
(3006418) Campylobacter sp identified in Tissue by Organism specific culture
7
26
2.79
1.60
1.1
1.0
—
—
—
0
0
(21494755) Public health laboratory ask at order entry panel
9
178
0.47
1.56
1.1
1.3
—
—
—
0
0
(3019250) Coagulation factor VIII activity actual/normal in Platelet poor plasma by Coagulation assay
9
37
2.54
1.51
4.1
6.5
%
148.6
172.8
—
9
37
(36660697) Celiac disease serology panel - Serum
18
103
1.88
1.51
1.2
1.2
—
—
—
0
0
(40761536) Microorganisms panel - Urine sediment
12
59
2.15
1.49
4.0
2.5
—
—
—
0
0
(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma
49
371
1.54
1.46
7.4
9.2
mmol/l
1.2
1.2
0.17
41
327
(3002582) Erythrocytes [#/volume] in Urine
34
237
1.60
1.44
3.0
2.9
e6/l
8.2
17.0
0.77
25
184
(3000494) Fungus identified in Specimen by Culture
16
93
1.83
1.28
1.3
1.7
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
18
109
1.76
1.27
1.9
2.1
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
15
86
1.85
1.25
1.8
1.8
—
—
—
0
0
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
37
272
1.52
1.24
2.8
2.4
—
—
—
0
0
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
12
64
1.97
1.23
3.4
2.7
—
—
—
0
0
(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma
22
143
1.66
1.22
3.5
2.8
ng/l
28.9
1246.2
1.03
15
98
(3004588) Protein electrophoresis panel - Serum or Plasma
7
30
2.41
1.14
1.3
3.3
—
—
—
0
0
(3013512) EKG study
25
171
1.58
1.14
4.6
2.8
—
—
—
0
0
(3018095) Leukocytes [#/volume] in Urine
36
268
1.49
1.13
3.4
3.4
e6/l
156.3
71.6
0.26
27
190
(3009261) Glucose [Presence] in Urine by Test strip
47
371
1.43
1.09
2.7
2.5
estimate
0.0
0.0
—
10
61
(3004716) Salmonella sp identified in Stool by Organism specific culture
9
48
1.94
1.03
1.2
1.0
—
—
—
0
0
(3026493) Urate [Moles/volume] in Serum or Plasma
26
185
1.52
1.00
2.9
3.0
umol/l
382.2
365.3
0.35
21
164
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
33
247
1.46
1.00
1.5
1.6
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
28
203
1.49
0.99
2.4
2.0
—
—
—
0
0
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
7
37
1.94
0.95
1.6
1.8
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
77
860
0.72
0.95
3.2
3.4
—
—
—
0
0
(3003694) ABO and Rh group [Type] in Blood
15
224
0.62
0.91
1.4
1.3
—
—
—
0
0
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
23
163
1.51
0.91
2.0
2.2
—
—
—
0
0
(3044889) 12 lead EKG panel
63
537
1.36
0.89
3.7
2.9
—
—
—
0
0
(3021601) Nitrite [Presence] in Urine by Test strip
45
365
1.37
0.87
3.6
3.6
estimate
0.0
0.0
0.00
11
70
(3035350) Ketones [Presence] in Urine by Test strip
45
365
1.37
0.87
2.8
2.5
estimate
0.0
0.0
0.00
11
65
(3025941) Bacteria identified in Stool by Culture
8
46
1.79
0.84
1.0
1.2
—
—
—
0
0
(3013139) Helicobacter pylori Ag [Presence] in Stool
6
32
1.92
0.83
1.8
1.2
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
14
90
1.63
0.82
2.1
2.0
—
—
—
0
0
(3029937) Albumin [Presence] in Urine by Test strip
25
185
1.44
0.80
3.6
2.7
estimate
0.0
0.0
0.49
11
65
(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum
15
99
1.59
0.80
1.4
1.2
u/ml
0.8
2.9
—
6
44
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
24
177
1.44
0.78
2.0
2.3
—
—
—
0
0
(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay
0
27
0.00
0.78
0.0
1.8
—
—
—
0
0
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
10
59
1.76
0.78
1.8
2.4
—
—
—
0
0
(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma
11
67
1.71
0.78
5.7
6.8
—
—
—
0
0
(40766189) Gliadin peptide IgG Ab [Units/volume] in Serum by Immunoassay
6
34
1.80
0.77
1.0
1.0
—
9.1
—
0
6
(40768804) Tissue Pathology biopsy report
31
241
1.38
0.76
1.2
1.6
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
9
145
0.59
0.75
1.1
1.6
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
5
25
2.04
0.73
1.8
1.8
—
—
—
0
0
(40768443) Skin Pathology biopsy report
5
26
1.96
0.71
1.4
1.3
—
—
—
0
0
(3017895) Helicobacter pylori Ab [Units/volume] in Serum
5
27
1.89
0.69
2.0
1.6
—
—
—
0
0
(36305247) Microscopic observation [Identifier] in Isolate by Gram stain
5
29
1.75
0.64
2.0
1.3
—
—
—
0
0
(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay
5
30
1.69
0.62
1.8
1.1
—
—
—
0
0
(4035726)
8
52
1.58
0.61
1.4
1.5
—
—
—
0
0
(3012220) Varicella zoster virus IgM Ab [Presence] in Serum by Immunoassay
0
23
0.00
0.59
0.0
1.0
—
—
—
0
0
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
8
54
1.51
0.58
1.7
2.4
—
—
—
0
0
(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay
6
36
1.70
0.57
1.5
1.0
—
—
—
0
0
(3005322) IgE [Units/volume] in Serum or Plasma
10
65
1.59
0.57
1.3
1.2
u/ml
352.2
188.3
—
10
59
(3013527) Hepatitis B virus core IgM Ab [Presence] in Serum
6
39
1.57
0.54
1.3
1.2
—
—
—
0
0
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
6
40
1.53
0.52
10.8
21.2
—
—
—
0
0
(40760892) CBC W Ordered Manual Differential panel - Blood
26
211
1.30
0.49
3.5
5.1
—
—
—
0
0
(3007164) IgA [Mass/volume] in Serum or Plasma
29
239
1.28
0.49
1.9
1.6
g/l
2.4
2.3
0.13
15
143
(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum
31
258
1.27
0.48
1.4
1.5
u/ml
0.5
2.4
—
6
52
(3015736) pH of Urine
35
297
1.25
0.47
2.7
2.7
—
—
—
0
0
(4010399)
7
50
1.42
0.46
1.3
1.5
—
—
—
0
0
(3009542) Hematocrit [Volume Fraction] of Blood
104
994
1.31
0.44
17.5
12.0
%
42.4
42.5
0.04
80
875
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
8
59
1.38
0.42
2.0
1.4
—
—
—
0
0
(3032773) Endomysium IgG Ab [Titer] in Serum
0
15
0.00
0.41
0.0
1.0
—
—
—
0
0
(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection
0
16
0.00
0.41
0.0
2.1
—
—
—
0
0
(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection
0
16
0.00
0.41
0.0
2.1
—
—
—
0
0
(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection
0
16
0.00
0.41
0.0
2.1
—
—
—
0
0
(3000492) Spirometry study
16
124
1.33
0.41
1.3
1.3
—
—
—
0
0
(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection
0
17
0.00
0.41
0.0
2.3
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
25
207
1.26
0.41
3.2
2.5
—
—
—
0
0
(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum
8
61
1.33
0.40
1.6
1.4
—
—
—
0
0
(3014148) Varicella zoster virus Ab [Titer] in Serum
0
18
0.00
0.40
0.0
1.1
—
—
—
0
0
(3050449) Albumin [Mass/time] in Urine collected for unspecified duration
0
18
0.00
0.40
0.0
2.0
—
151.7
—
0
9
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
17
212
0.77
0.40
1.4
1.6
—
—
—
0
0
(3002256) Pathology report gross observation
9
66
1.39
0.39
1.3
1.2
—
—
—
0
0
(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma
32
274
1.23
0.39
5.9
2.7
ng/l
13.6
21.5
0.91
18
147
(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection
0
19
0.00
0.39
0.0
3.4
—
—
—
0
0
(44816559) Phosphatidylethanol [Mass/volume] in Blood
5
36
1.41
0.38
1.4
1.3
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
35
396
0.84
0.34
3.3
2.3
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
24
203
1.23
0.33
8.1
4.9
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
7
96
0.71
0.32
1.3
1.4
—
—
—
0
0
(3028707) Methadone [Presence] in Urine by Screen method
7
53
1.34
0.31
4.7
4.4
—
—
—
0
0
(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay
5
74
0.66
0.27
1.6
1.7
—
—
—
0
0
(3001019) Free T4 and TSH panel - Serum or Plasma
5
39
1.29
0.23
1.4
1.6
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
19
164
1.19
0.22
3.5
2.6
—
—
—
0
0
(4027681)
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid
0
11
0.00
0.21
0.0
1.0
—
—
—
0
0
(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid
0
11
0.00
0.21
0.0
1.0
—
—
—
0
0
(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection
0
11
0.00
0.21
0.0
1.6
—
—
—
0
0
(40759883) Oligoclonal Bands IgG [Presence] in Cerebral spinal fluid by Isoelectric focusing
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
(3027231) Wheat IgE Ab [Units/volume] in Serum
0
10
0.00
0.21
0.0
1.6
—
—
—
0
0
(3041145) Herpes simplex virus IgM Ab [Presence] in Serum by Immunoassay
0
10
0.00
0.21
0.0
1.0
—
—
—
0
0
(3007847) Interleukin 2 Receptor Soluble [Units/volume] in Serum or Plasma
0
10
0.00
0.21
0.0
1.7
—
972.2
—
0
10
(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid
0
12
0.00
0.21
0.0
1.0
—
—
—
0
0
(3012447) Hantavirus puumala IgG Ab [Titer] in Serum
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
(3036086) Jo-1 extractable nuclear Ab [Units/volume] in Serum by Immunoassay
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
(3035933) Granulocytes/100 leukocytes in Blood
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
(3008898) HLA-B27 [Presence]
6
49
1.24
0.20
1.0
1.0
—
—
—
0
0
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
5
67
0.74
0.17
1.0
1.0
—
—
—
0
0
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
12
105
1.16
0.11
10.8
9.5
mmol/l
25.5
25.2
0.16
12
105
(3019150) Specific gravity of Urine by Refractometry
15
167
0.88
0.11
2.9
2.9
—
1.0
—
0
13
(3011288) Drugs identified in Urine by Screen method
10
86
1.18
0.11
3.2
4.5
—
—
—
0
0
(3000991) Gas panel - Venous blood
10
114
0.87
0.10
10.7
8.1
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
31
292
1.08
0.10
3.9
3.9
—
—
—
0
0
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
6
56
1.08
0.09
1.7
1.6
—
—
—
0
0
(3002173) Hemoglobin [Mass/volume] in Arterial blood
7
65
1.08
0.08
9.4
17.6
g/l
141.0
130.3
—
7
60
(3028026) IgM [Mass/volume] in Serum or Plasma
7
68
1.03
0.08
3.6
1.8
g/l
2.0
0.9
—
7
63
(3005719) IgG [Mass/volume] in Serum or Plasma
8
91
0.87
0.07
3.5
3.0
g/l
10.3
9.9
—
8
84
(3011397) Hemoglobin [Presence] in Urine by Test strip
18
169
1.08
0.05
3.1
2.9
—
—
—
0
0
(3027944) Amphetamines [Presence] in Urine
12
128
0.93
0.03
3.1
2.2
—
—
—
0
0
(3012544) pH of Venous blood
12
113
1.07
0.02
5.8
6.9
—
—
—
0
0
(3027008) Opiates [Presence] in Urine
13
131
0.99
0.00
2.9
2.7
—
—
—
0
0
(3000764) Benzodiazepines [Presence] in Urine
13
131
0.99
0.00
3.2
2.7
—
—
—
0
0
(1001926) Buprenorphine [Presence] in Urine by Screen method
10
97
1.03
0.00
4.1
2.9
—
—
—
0
0
(3028300) Cannabinoids [Presence] in Urine
13
132
0.98
0.00
3.4
2.7
—
—
—
0
0
(3024891) Influenza virus A+B Ag [Presence] in Specimen
5
53
0.94
0.00
1.0
1.2
—
—
—
0
0
(3016894) Varicella zoster virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3027901) Hemoglobin [Mass/volume] in Arterial cord blood
0
8
0.00
0.00
0.0
1.0
—
168.0
—
0
8
(3016502) Oxygen saturation in Arterial blood
7
73
0.96
0.00
9.4
16.1
%
95.9
96.3
—
7
68
(3013247) Albumin in CSF/Albumin in Serum or Plasma
0
6
0.00
0.00
0.0
1.0
—
5.4
—
0
6
(3019060) Gas panel - Arterial blood
5
50
1.00
0.00
1.6
13.1
—
—
—
0
0
(3042299) inFLIXimab [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
5.4
—
9.8
—
0
7
(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
(40761872) Peanut recombinant (rAra h) 2 IgE Ab [Units/volume] in Serum
0
9
0.00
0.00
0.0
1.3
—
0.2
—
0
9
(3028433) Virus identified in Specimen by Culture
0
9
0.00
0.00
0.0
1.2
—
—
—
0
0
(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(3014702) Chromogranin A [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
2.3
—
1.6
—
0
7
(3033386) Bacteria [Presence] in Cerebral spinal fluid by Light microscopy
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(42868766) Dientamoeba fragilis DNA [Presence] in Stool by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3016724) Homocysteine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.6
—
9.2
—
0
5
(3036035) von Willebrand factor (vWf) Ag actual/normal in Platelet poor plasma by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
147.6
—
0
5
(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(3027946) Carbon dioxide [Partial pressure] in Arterial blood
8
84
0.95
0.00
7.3
14.5
kpa
5.2
5.3
—
8
77
(3032352) Blasts [#/volume] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
8.2
—
—
—
0
0
(3011841) English Walnut IgE Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.2
—
1.7
—
0
6
(40765096) Chromosome analysis panel by Banding
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3041806) Other cells [#/volume] in Blood by Manual count
0
9
0.00
0.00
0.0
1.8
—
—
—
0
0
(3022313) Gas panel - Capillary blood
8
88
0.90
0.00
10.4
4.2
—
—
—
0
0
(37021073) Hepatitis C virus genotype in Serum or Plasma by Sequencing
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3015183) Erythrocyte sedimentation rate
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
(3016879) Cocaine [Presence] in Urine
12
120
1.00
0.00
3.1
2.9
—
—
—
0
0
(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(4133840)
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3004616) Nuclear Ab [Presence] in Serum
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(44816808) CXCL13 Ag [Mass/volume] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3022575) Varicella zoster virus IgG Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
948.6
—
0
5
(40758292) HTLV I+II Ab panel - Serum
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3017315) Amylase [Enzymatic activity/volume] in Urine
0
5
0.00
0.00
0.0
1.4
—
451.4
—
0
5
(3017817) Protein [Mass] in Urine collected for unspecified duration
0
8
0.00
0.00
0.0
6.1
—
—
—
0
0
(42529201) Cancer Ag 19-9 [Units/volume] in Serum or Plasma by Immunoassay
0
8
0.00
0.00
0.0
7.4
—
35.5
—
0
8
(3035320) C reactive protein [Mass/volume] in Body fluid
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(40768441) Liver Pathology biopsy report
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
(3009871) Measles virus Ab [Titer] in Serum
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3027801) Oxygen [Partial pressure] in Arterial blood
8
84
0.95
0.00
7.1
14.5
kpa
14.3
12.9
—
8
77
(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(3011831) Apolipoprotein B/Apolipoprotein A-I [Percentile]
0
8
0.00
0.00
0.0
1.6
—
—
—
0
0
(3007798) IgG/Albumin [Mass Ratio] in Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3022145) Colonoscopy Study observation
8
82
0.97
0.00
2.0
1.3
—
—
—
0
0
(3053028) Streptococcus sp identified in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
1.5
—
3.1
—
0
8
(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood
0
9
0.00
0.00
0.0
1.9
—
—
—
0
0
(40768797) Stomach Pathology biopsy report
10
100
1.00
0.00
1.3
1.3
—
—
—
0
0
(3044242) Glucose [Moles/volume] in Arterial blood
0
5
0.00
0.00
0.0
14.8
—
—
—
0
0
(3021197) Magnesium Ionized [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(40757349) CD3+CD4+ (T4 helper) cells/CD3+CD8+ (T8 suppressor cells) cells [# Ratio] in Blood
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3006442) Creatine [Moles/volume] in Serum or Plasma
0
9
0.00
0.00
0.0
1.4
—
—
—
0
0
(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(40767663) Brazil Nut recombinant (rBer e) 1 IgE Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(4038314)
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3026515) Parvovirus B19 IgM Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3008733) Herpes simplex virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.9
—
—
—
0
0
(3009550) Parvovirus B19 IgG Ab [Titer] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(37021550) Renin [Units/volume] in Plasma --upright
0
7
0.00
0.00
0.0
1.4
—
32.6
—
0
7
(37020300) Entamoeba histolytica DNA [Presence] in Stool by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3028679) Herpes simplex virus Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3016845) Adenovirus Ag [Presence] in Specimen by Immunofluorescence
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(42868414) European tick borne encephalitis virus IgM Ab [Presence] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

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Index endpoint: Q17_OTHER_SEX_CHROMOSOME_ABNORMALITI_MALE_PHENOT_NOT_ELSEW_CLASSIFIED – Other sex chromosome abnormalities, male phenotype, not elsewhere classified

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).