≡ Risteys
FG R12 + FR

Documentation Changelog GitHub Contact & Feedback
info icon

Congenital ectropion

EFO Endpoint Browser

Q17_CONGEN_ECTRO

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — Q10.1
  • Cause of death: ICD-10 — Q10.1

2 out of 7 registries used, show all original rules.

6

4. Check minimum number of events

None

6

5. Include endpoints

None

6

6. Filter based on genotype QC (FinnGen only)

6

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze
DF6v3

Case counts by codes

↥

FinnGen case counts by registry codes:

Not enough data for upset plot.

Not enough data for upset table.

Summary Statistics

↥

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 90 40 50
Only index persons 76 33 43
Unadjusted period prevalence (%)
Whole population 0.00 0.00 0.00
Only index persons 0.00 0.00 0.00
Median age at first event (years)
Whole population - 3.10 5.95
Only index persons 5.23 4.06 6.13

-FinnGen-

Key figures

All Female Male
Number of individuals 6 - -
Unadjusted period prevalence (%) 0.00 - -
Median age at first event (years) 25.09 - -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3021601) Nitrite [Presence] in Urine by Test strip
0
23
0.00
1.08
0.0
4.0
—
0.0
—
0
5
(3009261) Glucose [Presence] in Urine by Test strip
0
23
0.00
1.08
0.0
2.9
—
0.0
—
0
5
(3035350) Ketones [Presence] in Urine by Test strip
0
22
0.00
0.78
0.0
2.8
—
0.0
—
0
5
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
0
16
0.00
0.49
0.0
3.1
—
—
—
0
0
(3015736) pH of Urine
0
15
0.00
0.49
0.0
2.7
—
—
—
0
0
(3018095) Leukocytes [#/volume] in Urine
0
17
0.00
0.49
0.0
2.6
—
6.5
—
0
11
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
0
17
0.00
0.49
0.0
1.3
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
0
14
0.00
0.48
0.0
2.5
—
—
—
0
0
(3029937) Albumin [Presence] in Urine by Test strip
0
10
0.00
0.24
0.0
2.9
—
0.0
—
0
5
(3033658) Prothrombin time (PT) actual/Normal
0
12
0.00
0.23
0.0
3.3
—
87.2
—
0
12
(3026008) Bacteria identified in Urine by Culture
0
12
0.00
0.23
0.0
2.5
—
—
—
0
0
(3022145) Colonoscopy Study observation
0
9
0.00
0.23
0.0
1.3
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
0
13
0.00
0.23
0.0
2.8
—
—
—
0
0
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
2.8
—
—
—
0
0
(4035726)
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3018677) aPTT in Platelet poor plasma by Coagulation assay
0
6
0.00
0.00
0.0
3.0
—
30.1
—
0
6
(3026782) Osmolality of Urine
0
6
0.00
0.00
0.0
2.5
—
513.8
—
0
6
(3004716) Salmonella sp identified in Stool by Organism specific culture
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3013139) Helicobacter pylori Ag [Presence] in Stool
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
3.7
—
—
—
0
0
(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma
0
5
0.00
0.00
0.0
2.6
—
—
—
0
0
(40761511) CBC panel - Blood by Automated count
6
53
+∞
0.00
40.0
8.6
—
—
—
0
0
(3000850) Epithelial cells [#/volume] in Urine
0
7
0.00
0.00
0.0
2.4
—
5.5
—
0
7
(3020961) Endomysium IgA Ab [Titer] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3008898) HLA-B27 [Presence]
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
0
8
0.00
0.00
0.0
3.0
—
—
—
0
0
(3050129) First trimester maternal screen panel - Serum or Plasma
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0

Mortality – FinRegistry

↥

Association

Association between endpoint Q17_CONGEN_ECTRO and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have Q17_CONGEN_ECTRO.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

↥

Index endpoint: Q17_CONGEN_ECTRO – Congenital ectropion

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
loading spinner Loading data