This is a non-core endpoint: only basic statistics are computed.

See these related core endpoints for full statistics:

P16_INFECTIONS_SPECIFIC_PERINA_PERIOD

Omphalitis of newborn with or without mild haemorrhage

Endpoint Browser

P16_OMPHA_NEWBO_W_WO_MILD_HAEMORRHAGE

No definition available.

Suggest a new description

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — P38 Cause of death: ICD-10 — P38 2 out of 7 registries used, show all original rules.	7
4. Check minimum number of events None	7
5. Include endpoints None	7
6. Filter based on genotype QC (FinnGen only)	7

Control definitions (FinnGen only)

Control exclude: P16_INFECTIONS_SPECIFIC_PERINA_PERIOD

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: P3
Name in latin: Omphalitis neonatalis cum/sine haemorrhagia levi

NAME	P16_OMPHA_NEWBO_W_WO_MILD_HAEMORRHAGE
CONTROL_EXCLUDE	P16_INFECTIONS_SPECIFIC_PERINA_PERIOD
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	P38
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	P38
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Omphalitis of newborn with or without mild haemorrhage based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Not enough data for upset plot.

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	677	296	381
Only index persons	339	154	185
Unadjusted period prevalence (%)
Whole population	0.01	0.01	0.01
Only index persons	0.01	0.01	0.01
Median age at first event (years)
Whole population	-	0.03	0.03
Only index persons	0.03	0.04	0.03

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	7	-	5
Unadjusted period prevalence (%)	0.00	-	0.00
Median age at first event (years)	0.36	-	0.04

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

No data available

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

unit

cases

controls

-log₁₀(p)

N cases

N controls

(3007164) IgA [Mass/volume] in Serum or Plasma

0.00

1.05

0.0

1.6

—

1.3

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

0.00

1.05

0.0

1.5

—

0.4

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

0.00

0.47

0.0

1.8

—

(3019832) Treponema pallidum Ab [Presence] in Serum

0.00

0.47

0.0

1.7

—

(3027008) Opiates [Presence] in Urine

0.00

0.23

0.0

1.9

—

(3027944) Amphetamines [Presence] in Urine

0.00

0.23

0.0

1.9

—

(3016879) Cocaine [Presence] in Urine

0.00

0.23

0.0

1.9

—

(36660697) Celiac disease serology panel - Serum

0.00

0.23

0.0

1.3

—

(40760892) CBC W Ordered Manual Differential panel - Blood

0.00

0.23

0.0

4.0

—

(3028300) Cannabinoids [Presence] in Urine

0.00

0.23

0.0

2.0

—

(3000764) Benzodiazepines [Presence] in Urine

0.00

0.23

0.0

1.9

—

(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma

0.00

0.23

0.0

1.9

—

3.0

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

0.00

0.23

0.0

1.7

—

(40768804) Tissue Pathology biopsy report

0.00

0.23

0.0

2.2

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

0.00

0.23

0.0

1.3

—

(3011288) Drugs identified in Urine by Screen method

0.00

0.23

0.0

3.1

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

0.00

0.23

0.0

1.4

—

(3015377) Calcium [Moles/volume] in Serum or Plasma

0.00

0.23

0.0

1.3

—

2.4

—

(3021706) Oxygen [Partial pressure] in Arterial cord blood

0.00

0.0

1.0

—

2.9

—

(3003932) Carbon dioxide [Partial pressure] in Arterial cord blood

0.00

0.0

1.0

—

7.6

—

(3041008) Bicarbonate [Moles/volume] standard in Arterial cord blood

0.00

0.0

1.0

—

20.1

—

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

4.5

—

36.5

—

(3006598) pH of Arterial cord blood

0.00

0.0

1.0

—

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

0.00

0.0

2.3

—

35.7

—

(3023511) Choriogonadotropin [Units/volume] in Urine

0.00

0.0

1.2

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

0.00

0.0

1.0

—

(3021387) Prolactin [Units/volume] in Serum or Plasma

0.00

0.0

2.2

—

606.2

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

0.00

0.0

2.4

—

(3028026) IgM [Mass/volume] in Serum or Plasma

0.00

0.0

3.2

—

0.8

—

(3017732) Neutrophils [#/volume] in Blood

0.00

0.0

2.9

—

3.2

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

0.00

0.0

1.0

—

(3017446) Testosterone [Moles/volume] in Serum or Plasma

0.00

0.0

3.0

—

12.9

—

(3020961) Endomysium IgA Ab [Titer] in Serum

0.00

0.0

1.0

—

(40761536) Microorganisms panel - Urine sediment

0.00

0.0

1.4

—

(3016417) Amylase.pancreatic [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

3.4

—

36.4

—

(3026008) Bacteria identified in Urine by Culture

0.00

0.0

1.6

—

(3028707) Methadone [Presence] in Urine by Screen method

0.00

0.0

2.4

—

(3009214) Lutropin [Units/volume] in Serum or Plasma

0.00

0.0

3.8

—

7.0

—

(3004789) Transferrin [Mass/volume] in Serum or Plasma

0.00

0.0

2.6

—

2.5

—

(3022948) Iron [Moles/volume] in Serum or Plasma

0.00

0.0

2.4

—

17.9

—

(3007853) Bacteria identified in Skin by Aerobe culture

0.00

0.0

1.3

—

Mortality – FinRegistry

↥

Association

Association between endpoint P16_OMPHA_NEWBO_W_WO_MILD_HAEMORRHAGE and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have P16_OMPHA_NEWBO_W_WO_MILD_HAEMORRHAGE.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

↥

Index endpoint: P16_OMPHA_NEWBO_W_WO_MILD_HAEMORRHAGE – Omphalitis of newborn with or without mild haemorrhage

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

Extremity

rg [CI]

Extremity

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Omphalitis of newborn with or without mild haemorrhage

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints