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This is a non-core endpoint: only basic statistics are computed.

Kernicterus

EFO Endpoint Browser

P16_KERNICTERUS

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — P57
  • Cause of death: ICD-10 — P57

2 out of 7 registries used, show all original rules.

5

4. Check minimum number of events

None

5

5. Include endpoints

None

5

6. Filter based on genotype QC (FinnGen only)

5

Control definitions (FinnGen only)

Control exclude
P16_HAEMORRHAGIC_HAEMATOL_DISORD_FETUS_NEWBO

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
P[5-6]
Name in latin
Icterus nuclearis

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 117 42 75
Only index persons 85 29 56
Unadjusted period prevalence (%)
Whole population 0.00 0.00 0.00
Only index persons 0.00 0.00 0.00
Median age at first event (years)
Whole population - 0.12 0.36
Only index persons 20.16 0.23 30.48

-FinnGen-

Key figures

All Female Male
Number of individuals 5 - -
Unadjusted period prevalence (%) 0.00 - -
Median age at first event (years) 65.50 - -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

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OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3021601) Nitrite [Presence] in Urine by Test strip
0
18
0.00
0.80
0.0
4.3
—
0.0
—
0
5
(3035350) Ketones [Presence] in Urine by Test strip
0
18
0.00
0.80
0.0
3.3
—
0.0
—
0
5
(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma
0
16
0.00
0.51
0.0
4.9
—
17.5
—
0
9
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
0
14
0.00
0.50
0.0
2.9
—
—
—
0
0
(3029937) Albumin [Presence] in Urine by Test strip
0
13
0.00
0.49
0.0
3.2
—
0.0
—
0
5
(42870588) Differential panel, method unspecified - Blood
0
13
0.00
0.49
0.0
5.5
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
0
11
0.00
0.24
0.0
3.0
—
—
—
0
0
(3009508) Creatinine [Moles/volume] in Urine
0
10
0.00
0.24
0.0
2.2
—
9.3
—
0
10
(3041096) Erythrocytes [Presence] in Urine by Automated
0
10
0.00
0.24
0.0
2.4
—
—
—
0
0
(3015736) pH of Urine
0
12
0.00
0.24
0.0
3.3
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
0
8
0.00
0.00
0.0
3.3
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
5
0.00
0.00
0.0
2.4
—
—
—
0
0
(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma
0
5
0.00
0.00
0.0
2.2
—
2.4
—
0
5
(3018677) aPTT in Platelet poor plasma by Coagulation assay
0
5
0.00
0.00
0.0
1.8
—
29.6
—
0
5
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
2.0
—
—
—
0
0
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
0
6
0.00
0.00
0.0
4.5
—
—
—
0
0
(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(40758558) Short blood count panel - Blood
0
7
0.00
0.00
0.0
4.7
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
0
7
0.00
0.00
0.0
4.6
—
—
—
0
0
(3027945) Reticulocytes/100 erythrocytes in Blood
0
7
0.00
0.00
0.0
1.4
—
1.5
—
0
7
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0

Mortality – FinRegistry

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Association

Association between endpoint P16_KERNICTERUS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have P16_KERNICTERUS.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

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Index endpoint: P16_KERNICTERUS – Kernicterus

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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