This is a non-core endpoint: only basic statistics are computed.

See these related core endpoints for full statistics:

P16_INFECTIONS_SPECIFIC_PERINA_PERIOD

Congenital viral diseases

Endpoint Browser

P16_CONGN_VIRAL_DISEA

No definition available.

Suggest a new description

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — P35 Cause of death: ICD-10 — P35 2 out of 7 registries used, show all original rules.	13
4. Check minimum number of events None	13
5. Include endpoints None	13
6. Filter based on genotype QC (FinnGen only)	13

Control definitions (FinnGen only)

Control exclude: P16_INFECTIONS_SPECIFIC_PERINA_PERIOD

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: P3
Name in latin: Morbi virales congeniti

NAME	P16_CONGN_VIRAL_DISEA
CONTROL_EXCLUDE	P16_INFECTIONS_SPECIFIC_PERINA_PERIOD
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	P35
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	P35
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

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List of similar endpoints to Congenital viral diseases based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Full data table

Summary Statistics

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-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	421	203	217
Only index persons	222	107	115
Unadjusted period prevalence (%)
Whole population	0.01	0.01	0.01
Only index persons	0.00	0.00	0.00
Median age at first event (years)
Whole population	0.23	0.21	0.06
Only index persons	0.11	0.14	0.09

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	13	9	-
Unadjusted period prevalence (%)	0.00	0.00	-
Median age at first event (years)	14.57	0.12	-

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

No data available

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

unit

cases

controls

-log₁₀(p)

N cases

N controls

(40758558) Short blood count panel - Blood

4.64

1.84

4.5

2.8

—

(1761868) Lipid panel - Serum or Plasma

0.00

1.15

0.0

1.7

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

2.61

0.92

5.6

6.2

mmol/l

5.4

5.7

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

2.48

0.81

1.8

1.6

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

1.83

0.48

4.0

3.5

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

1.83

0.48

3.0

1.7

—

(42870588) Differential panel, method unspecified - Blood

1.76

0.47

11.6

4.1

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

1.85

0.45

2.2

2.9

—

(3044889) 12 lead EKG panel

1.67

0.42

1.7

3.3

—

(3037467) Urinalysis macro (dipstick) panel - Urine

1.92

0.42

6.0

4.2

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

1.64

0.40

11.7

6.0

e9/l

2.9

4.1

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.57

0.28

1.8

2.8

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

1.45

0.27

2.6

—

(3021601) Nitrite [Presence] in Urine by Test strip

1.56

0.26

5.2

4.7

—

0.0

—

(3035350) Ketones [Presence] in Urine by Test strip

1.46

0.25

3.2

3.7

—

0.0

—

(3006315) Basophils [#/volume] in Blood

1.41

0.25

12.8

4.5

e9/l

0.0

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

0.69

0.24

5.6

2.3

mmol/l

2.5

2.8

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

0.69

0.24

5.0

2.2

mmol/l

1.4

1.5

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

0.00

0.22

0.0

1.7

—

(40761536) Microorganisms panel - Urine sediment

0.00

0.22

0.0

3.3

—

(3001604) Monocytes [#/volume] in Blood

1.37

0.12

12.8

4.4

e9/l

0.5

—

(3013115) Eosinophils [#/volume] in Blood

1.28

0.11

13.0

4.3

e9/l

0.2

—

(3013707) Erythrocyte sedimentation rate by Westergren method

1.32

0.11

7.3

3.7

mm/h

8.7

8.0

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

0.00

0.0

5.8

—

(3014111) Lactate [Moles/volume] in Serum or Plasma

0.00

0.0

8.8

—

1.0

—

(3023024) Carbon dioxide [Partial pressure] in Capillary blood

0.00

0.0

2.5

—

5.2

—

(3001122) Ferritin [Mass/volume] in Serum or Plasma

0.97

0.00

2.6

2.2

ug/l

33.4

34.8

—

(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture

0.00

0.0

1.8

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.3

—

(3030981) Hyaline casts [#/volume] in Urine by Automated count

0.00

0.0

1.3

—

0.0

—

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

0.00

0.0

1.0

—

1.4

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.2

—

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

0.00

0.0

1.8

—

(3025149) Bordetella pertussis IgA Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

0.0

1.0

—

0.2

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

0.00

0.0

3.0

—

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.1

—

(3017732) Neutrophils [#/volume] in Blood

0.00

0.0

1.6

—

3.9

—

(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum

0.00

0.0

2.8

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.0

1.0

—

(3025018) Bordetella pertussis Ab [Titer] in Serum

0.00

0.0

1.4

—

(3016888) Borrelia burgdorferi IgG Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(3042936) Bacteria identified in Isolate by Culture

0.00

0.0

2.6

—

(3008898) HLA-B27 [Presence]

0.00

0.0

1.0

—

(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood

0.00

0.0

1.8

—

44.7

—

(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma

0.00

0.0

1.4

—

(3025941) Bacteria identified in Stool by Culture

0.00

0.0

1.0

—

(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum

0.00

0.0

1.1

—

(3016502) Oxygen saturation in Arterial blood

0.00

0.0

12.2

—

97.8

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

0.00

0.0

1.3

—

(3022145) Colonoscopy Study observation

0.00

0.0

2.1

—

(3009261) Glucose [Presence] in Urine by Test strip

1.10

0.00

3.8

—

0.0

—

Mortality – FinRegistry

↥

Association

Association between endpoint P16_CONGN_VIRAL_DISEA and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have P16_CONGN_VIRAL_DISEA.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

↥

Index endpoint: P16_CONGN_VIRAL_DISEA – Congenital viral diseases

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

Extremity

rg [CI]

Extremity

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Congenital viral diseases

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints