This is a non-core endpoint: only basic statistics are computed.
Carcinoma in situ of trachea
CD2_INSITU_TRACHEA_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
|
1. Apply sex-specific ruleNone |
- |
2. Check conditions
|
- |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpointsNone |
- |
6. Filter based on genotype QC (FinnGen only)None |
- |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF9
- Parent code in ICD-10
- D02
- Name in latin
- Carcinoma in situ cutis
Similar endpoints
↥List of similar endpoints to
Carcinoma in situ of trachea
based on the number of shared cases.
Similar with more cases:
- Carcinoma in situ of trachea
- Carcinoma in situ of middle ear and respiratory system
- Carcinoma in situ of middle ear and respiratory system
- In situ neoplasms
- In situ neoplasms
Similar with less cases:
Case counts by codes
↥FinnGen case counts by registry codes:
No upset plot: script not run.
No upset table: script not run.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | - | - | - |
| Only index persons | - | - | - |
| Unadjusted period prevalence (%) | |||
| Whole population | - | - | - |
| Only index persons | - | - | - |
| Median age at first event (years) | |||
| Whole population | - | - | - |
| Only index persons | - | - | - |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 5 | - | - |
| Unadjusted period prevalence (%) | 0.00 | - | - |
| Median age at first event (years) | 59.41 | - | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(36304419) Bacteria [Presence] in Urine
5
14
+∞
2.48
1.0
3.3
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
5
15
+∞
2.35
1.0
4.7
—
—
—
0
0
(3031040) Bacteria [#/volume] in Urine by Automated count
5
31
+∞
0.82
2.4
3.5
—
—
—
0
0
(3002385) Erythrocyte distribution width [Ratio]
5
36
+∞
0.50
25.4
15.3
%
14.8
13.5
—
5
36
(1761868) Lipid panel - Serum or Plasma
0
11
0.00
0.24
0.0
4.2
—
—
—
0
0
(3003694) ABO and Rh group [Type] in Blood
0
11
0.00
0.24
0.0
1.1
—
—
—
0
0
(3044889) 12 lead EKG panel
5
38
+∞
0.24
3.2
4.1
—
—
—
0
0
(3013512) EKG study
0
12
0.00
0.24
0.0
2.9
—
—
—
0
0
(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)
5
41
+∞
0.24
16.2
12.8
ml/min/173m2
71.2
71.0
—
5
29
(3000494) Fungus identified in Specimen by Culture
0
9
0.00
0.24
0.0
1.9
—
—
—
0
0
(40768797) Stomach Pathology biopsy report
0
9
0.00
0.24
0.0
1.1
—
—
—
0
0
(40761511) CBC panel - Blood by Automated count
5
43
+∞
0.00
15.6
11.3
—
—
—
0
0
(3003458) Phosphate [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
14.0
—
1.1
—
0
5
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(3019225) pH of Specimen
0
6
0.00
0.00
0.0
2.8
—
—
—
0
0
(3014576) Chloride [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
2.2
—
103.2
—
0
6
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
0
6
0.00
0.00
0.0
2.2
—
—
—
0
0
(3022621) pH of Urine by Test strip
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3012544) pH of Venous blood
0
7
0.00
0.00
0.0
6.9
—
—
—
0
0
(3021447) Carbon dioxide [Partial pressure] in Venous blood
0
6
0.00
0.00
0.0
7.8
—
5.9
—
0
6
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3012336) Haptoglobin [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.4
—
2.0
—
0
5
(3002032) Base excess in Venous blood by calculation
0
6
0.00
0.00
0.0
7.8
—
-0.2
—
0
6
(3000991) Gas panel - Venous blood
0
6
0.00
0.00
0.0
8.2
—
—
—
0
0
(3025941) Bacteria identified in Stool by Culture
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
5
45
+∞
-0.00
15.8
15.9
umol/l
82.0
83.8
—
5
45
Mortality – FinRegistry
↥Association
Association between endpoint CD2_INSITU_TRACHEA_EXALLC and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have CD2_INSITU_TRACHEA_EXALLC.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: CD2_INSITU_TRACHEA_EXALLC – Carcinoma in situ of trachea
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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