This is a non-core endpoint: only basic statistics are computed.

Carcinoma in situ of other/unspecified male genital organs

CD2_INSITU_MALE_GENITAL_NOS_EXALLC

No definition available.

Endpoint definition

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Endpoint definition steps	FinnGen
Phenotype data
1. Apply sex-specific rule only males	-
2. Check conditions None
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D07.6& Hospital discharge: ICD-9 — 2336 Cause of death: ICD-10 — D07.6& Cause of death: ICD-9 — 2336 2 out of 7 registries used, show all original rules.	-
4. Check minimum number of events None	-
5. Include endpoints None	-
6. Filter based on genotype QC (FinnGen only) None	-

Control definitions (FinnGen only)

Control exclude: C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2
Parent code in ICD-10: D07
Name in latin: Carcinoma in situ organorum genitalium masculinorum aliorum sive non specificatorum

NAME	CD2_INSITU_MALE_GENITAL_NOS_EXALLC
CONTROL_EXCLUDE	C3_CANCER\|C3_CANCER_WIDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX	1
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D076
HD_ICD_9	2336
HD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D076
COD_ICD_9	2336
COD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

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List of similar endpoints to Carcinoma in situ of other/unspecified male genital organs based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Carcinoma in situ of other/unspecified male genital organs

Case counts by codes

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FinnGen case counts by registry codes:

No upset plot: script not run.

No upset table: script not run.

Summary Statistics

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-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	11	-	11
Unadjusted period prevalence (%)	0.00	-	0.00
Median age at first event (years)	68.59	-	68.59

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

No data available

LabWAS

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(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

unit

cases

controls

-log₁₀(p)

N cases

N controls

(40768443) Skin Pathology biopsy report

19.61

4.06

1.2

1.0

—

(3042936) Bacteria identified in Isolate by Culture

8.69

2.71

2.2

1.9

—

(3018677) aPTT in Platelet poor plasma by Coagulation assay

7.40

2.45

1.7

1.9

33.2

29.6

—

(3023368) Bacteria identified in Blood by Culture

5.63

2.01

4.2

3.9

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

6.07

1.96

4.4

7.8

mmol/l

103.8

103.2

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

5.59

1.85

2.6

1.9

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

4.24

1.58

1.7

3.2

—

(3015377) Calcium [Moles/volume] in Serum or Plasma

3.93

1.39

8.2

1.7

mmol/l

2.4

2.3

—

(40758558) Short blood count panel - Blood

3.12

0.90

4.6

—

(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma

2.45

0.73

3.0

2.3

nmol/l

72.1

71.8

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

0.00

0.45

0.0

1.3

—

1.1

—

(3023520) Reticulocytes [#/volume] in Blood

0.00

0.22

0.0

2.5

—

87.2

—

(3007164) IgA [Mass/volume] in Serum or Plasma

0.00

0.22

0.0

1.3

—

3.1

—

(3021440) Promyelocytes/100 leukocytes in Blood

0.00

0.0

8.0

—

(3039443) Prostate specific Ag panel - Serum or Plasma

0.00

0.0

1.0

—

(3025159) Blasts/100 leukocytes in Blood

0.00

0.0

8.0

—

(4034850)

0.00

0.0

4.2

—

(3004119) Hemoglobin [Mass/volume] in Venous blood

0.00

0.0

2.3

—

117.9

—

(3022313) Gas panel - Capillary blood

0.00

0.0

1.8

—

(44816559) Phosphatidylethanol [Mass/volume] in Blood

0.00

0.0

1.0

—

(1761482) Bacteria [#/volume] in Urine by Culture

0.00

0.0

3.4

—

(3027273) Bicarbonate [Moles/volume] in Venous blood

0.00

0.0

3.6

—

23.8

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

0.00

0.0

1.8

—

(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma

0.00

0.0

1.3

—

38.3

—

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

0.00

0.0

5.0

—

1.2

—

(3027544) Mycobacterium sp identified in Sputum by Organism specific culture

0.00

0.0

3.0

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

0.00

0.0

1.1

—

(36032269) Testosterone Free [Moles/volume] in Serum or Plasma by calculation

0.00

0.0

1.6

—

262.7

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

0.00

0.0

1.8

—

0.5

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

0.00

0.0

1.3

—

(3019225) pH of Specimen

0.00

0.0

1.5

—

(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood

0.00

0.0

4.0

—

59.4

—

(3023024) Carbon dioxide [Partial pressure] in Capillary blood

0.00

0.0

1.9

—

5.1

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

0.00

0.0

1.2

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

0.00

0.0

2.2

—

(3009343) pH of Capillary blood

0.00

0.0

2.0

—

(3030981) Hyaline casts [#/volume] in Urine by Automated count

0.00

0.0

4.1

—

0.0

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

0.00

0.0

1.3

—

(3000067) Parathyrin.intact [Mass/volume] in Serum or Plasma

0.00

0.0

8.9

—

123.7

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

0.00

0.0

1.8

—

1.0

—

Mortality – FinRegistry

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This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

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Index endpoint: CD2_INSITU_MALE_GENITAL_NOS_EXALLC – Carcinoma in situ of other/unspecified male genital organs

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Carcinoma in situ of other/unspecified male genital organs

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

LabWAS

Mortality – FinRegistry

Relationships between endpoints