This is a non-core endpoint: only basic statistics are computed.
Carcinoma in situ, eye
CD2_INSITU_EYE_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
|
1. Apply sex-specific ruleNone |
- |
2. Check conditions
|
- |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpointsNone |
- |
6. Filter based on genotype QC (FinnGen only)None |
- |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF9
- Parent code in ICD-10
- D09
Similar endpoints
↥List of similar endpoints to
Carcinoma in situ, eye
based on the number of shared cases.
Similar with more cases:
- Carcinoma in situ, eye
- Carcinoma in situ of other and unspecified sites
- Carcinoma in situ of other and unspecified sites
- In situ neoplasms
- In situ neoplasms
Similar with less cases:
Case counts by codes
↥FinnGen case counts by registry codes:
No upset plot: script not run.
No upset table: script not run.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | - | - | - |
| Only index persons | - | - | - |
| Unadjusted period prevalence (%) | |||
| Whole population | - | - | - |
| Only index persons | - | - | - |
| Median age at first event (years) | |||
| Whole population | - | - | - |
| Only index persons | - | - | - |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 7 | - | 6 |
| Unadjusted period prevalence (%) | 0.00 | - | 0.00 |
| Median age at first event (years) | 63.39 | - | 64.33 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma
0
10
0.00
0.23
0.0
2.7
—
187.4
—
0
10
(3023368) Bacteria identified in Blood by Culture
0
10
0.00
0.23
0.0
5.5
—
—
—
0
0
(4010399)
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
0
5
0.00
0.00
0.0
2.8
—
—
—
0
0
(3012544) pH of Venous blood
0
6
0.00
0.00
0.0
6.2
—
—
—
0
0
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3020779) Urea [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
4.4
—
14.0
—
0
5
(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
2.0
—
223.9
—
0
7
(3003458) Phosphate [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
5.7
—
1.1
—
0
7
Mortality – FinRegistry
↥Association
Association between endpoint CD2_INSITU_EYE_EXALLC and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have CD2_INSITU_EYE_EXALLC.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: CD2_INSITU_EYE_EXALLC – Carcinoma in situ, eye
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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