This is a non-core endpoint: only basic statistics are computed.
Carcinoma in situ of other/unspecified digestive organs
CD2_INSITU_DIGESTIVE_NOS_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
|
1. Apply sex-specific ruleNone |
- |
2. Check conditionsNone |
|
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpointsNone |
- |
6. Filter based on genotype QC (FinnGen only)None |
- |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
Similar endpoints
↥List of similar endpoints to
Carcinoma in situ of other/unspecified digestive organs
based on the number of shared cases.
Similar with more cases:
- Carcinoma in situ of other/unspecified digestive organs
- Carcinoma in situ of other and unspecified digestive organs
- Carcinoma in situ of other and unspecified digestive organs
- In situ neoplasms
- In situ neoplasms
Similar with less cases:
Case counts by codes
↥FinnGen case counts by registry codes:
No upset plot: script not run.
No upset table: script not run.
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 13 | 5 | 8 |
| Unadjusted period prevalence (%) | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | 58.71 | 49.52 | 64.44 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3025839) Triglyceride [Moles/volume] in Serum or Plasma
0
30
0.00
1.15
0.0
2.0
—
1.2
—
0
23
(3013650) Neutrophils [#/volume] in Blood by Automated count
7
47
2.05
0.62
12.9
7.8
e9/l
3.9
4.8
—
7
42
(3044889) 12 lead EKG panel
5
75
0.46
0.61
7.4
4.3
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
5
30
2.07
0.51
4.0
2.0
—
—
—
0
0
(3019550) Sodium [Moles/volume] in Serum or Plasma
8
99
0.50
0.50
34.3
16.6
mmol/l
139.8
139.3
—
8
94
(40761511) CBC panel - Blood by Automated count
8
99
0.50
0.50
28.8
13.1
—
—
—
0
0
(3015736) pH of Urine
5
31
1.99
0.50
6.2
4.1
—
—
—
0
0
(3020460) C reactive protein [Mass/volume] in Serum or Plasma
8
98
0.53
0.49
28.9
12.7
mg/l
28.0
24.3
—
8
72
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
6
42
1.79
0.44
6.0
3.7
—
—
—
0
0
(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum
0
17
0.00
0.44
0.0
1.4
—
1.3
—
0
5
(3018251) Fasting glucose [Moles/volume] in Serum or Plasma
8
95
0.59
0.29
6.0
5.3
mmol/l
5.9
6.0
—
8
87
(3013512) EKG study
5
37
1.57
0.28
1.8
4.0
—
—
—
0
0
(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma
6
46
1.56
0.26
7.2
4.8
mmol/l
1.2
1.2
—
6
37
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
0
10
0.00
0.22
0.0
5.7
—
—
—
0
0
(40761536) Microorganisms panel - Urine sediment
0
10
0.00
0.22
0.0
3.1
—
—
—
0
0
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
0
12
0.00
0.22
0.0
1.1
—
—
—
0
0
(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma
5
42
1.31
0.12
6.8
5.2
mmol/l
1.2
1.2
—
5
36
(3013115) Eosinophils [#/volume] in Blood
5
45
1.18
0.11
6.6
6.8
e9/l
0.2
0.2
—
5
39
(3031040) Bacteria [#/volume] in Urine by Automated count
5
59
0.75
0.11
5.0
3.9
—
—
—
0
0
(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma
8
73
1.25
0.11
10.3
5.4
u/l
79.1
75.9
—
8
65
(3027315) Oxygen [Partial pressure] in Blood
0
6
0.00
0.00
0.0
5.3
—
8.4
—
0
6
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
5.7
—
23.8
—
0
6
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(4034850)
0
6
0.00
0.00
0.0
5.3
—
—
—
0
0
(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(40768443) Skin Pathology biopsy report
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3003327) Ova and parasites identified in Stool by Light microscopy
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3004588) Protein electrophoresis panel - Serum or Plasma
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3017143) Hepatitis C virus Ab [Presence] in Serum
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
0
6
0.00
0.00
0.0
2.0
—
—
—
0
0
(3000067) Parathyrin.intact [Mass/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
2.5
—
39.7
—
0
6
(3013290) Carbon dioxide [Partial pressure] in Blood
0
6
0.00
0.00
0.0
5.3
—
4.8
—
0
6
(3009445) Proteinase 3 Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.9
—
—
—
0
0
(3037467) Urinalysis macro (dipstick) panel - Urine
6
61
0.97
0.00
6.3
4.7
—
—
—
0
0
(3016888) Borrelia burgdorferi IgG Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
(3013826) Glucose [Moles/volume] in Serum or Plasma
6
62
0.94
0.00
9.5
3.9
mmol/l
7.6
7.1
—
6
54
(3000492) Spirometry study
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
2.4
—
—
—
0
0
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3012336) Haptoglobin [Mass/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.0
—
1.3
—
0
7
(36660697) Celiac disease serology panel - Serum
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3008898) HLA-B27 [Presence]
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3003284) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum by Immunofluorescence
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3022145) Colonoscopy Study observation
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3026989) Triiodothyronine (T3) Free [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
5.4
—
4.1
—
0
7
(3022621) pH of Urine by Test strip
0
8
0.00
0.00
0.0
1.9
—
—
—
0
0
(3017732) Neutrophils [#/volume] in Blood
0
9
0.00
0.00
0.0
3.4
—
3.2
—
0
9
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: CD2_INSITU_DIGESTIVE_NOS_EXALLC – Carcinoma in situ of other/unspecified digestive organs
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).