This is a non-core endpoint: only basic statistics are computed.
See these related core endpoints for full statistics:
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
9 |
4. Check minimum number of eventsNone |
9 |
5. Include endpointsNone |
9 |
6. Filter based on genotype QC (FinnGen only) |
9 |
Control definitions (FinnGen only)
- Control exclude
- AB1_PROTOZOAL
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Chagas' disease
based on the number of shared cases.
Similar with more cases:
- Protozoal diseases
- Certain infectious and parasitic diseases
- Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified
- Paracetamol of NSAID medication
- Any operation in hilmo
Similar with less cases:
None
Case counts by codes
↥FinnGen case counts by registry codes:
Not enough data for upset plot.
Not enough data for upset table.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 77 | 33 | 43 |
| Only index persons | 58 | 29 | 29 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.00 | 0.00 | 0.00 |
| Only index persons | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | |||
| Whole population | 49.85 | 50.48 | 49.46 |
| Only index persons | 37.25 | 43.41 | 31.10 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 9 | 5 | - |
| Unadjusted period prevalence (%) | 0.00 | 0.00 | - |
| Median age at first event (years) | 51.05 | 55.25 | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3044889) 12 lead EKG panel
9
49
+∞
2.02
6.0
4.6
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
0
27
0.00
0.96
0.0
5.5
—
—
—
0
0
(3018251) Fasting glucose [Moles/volume] in Serum or Plasma
9
75
+∞
0.46
4.4
4.5
mmol/l
5.8
5.7
—
9
66
(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood
0
10
0.00
0.23
0.0
5.8
—
1.2
—
0
10
(3004410) Hemoglobin A1c/Hemoglobin.total in Blood
9
77
+∞
0.22
5.8
4.6
mmol/mol
37.7
39.6
—
9
70
(3001019) Free T4 and TSH panel - Serum or Plasma
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(40761536) Microorganisms panel - Urine sediment
0
9
0.00
0.00
0.0
5.8
—
—
—
0
0
(1616796) Gas panel - Central venous blood
0
5
0.00
0.00
0.0
5.8
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
9
0.00
0.00
0.0
2.4
—
—
—
0
0
(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.0
—
56.4
—
0
5
(3017895) Helicobacter pylori Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(21494755) Public health laboratory ask at order entry panel
0
9
0.00
0.00
0.0
1.3
—
—
—
0
0
(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma
9
81
+∞
0.00
5.3
5.4
mmol/l
2.7
2.7
—
9
72
(3002256) Pathology report gross observation
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
2.3
—
—
—
0
0
(3013290) Carbon dioxide [Partial pressure] in Blood
0
6
0.00
0.00
0.0
3.2
—
5.2
—
0
6
(3019225) pH of Specimen
0
6
0.00
0.00
0.0
3.3
—
—
—
0
0
(3027315) Oxygen [Partial pressure] in Blood
0
6
0.00
0.00
0.0
3.2
—
8.1
—
0
6
(3010421) pH of Blood
0
6
0.00
0.00
0.0
3.5
—
7.4
—
0
6
(3000492) Spirometry study
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
0
6
0.00
0.00
0.0
2.0
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
9
81
+∞
0.00
29.4
13.9
umol/l
110.2
86.7
—
9
81
Mortality – FinRegistry
↥Association
Association between endpoint AB1_CHAGA and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have AB1_CHAGA.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: AB1_CHAGA – Chagas' disease
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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